Difference between revisions of "Tiso gene 9423"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SEDOHEPTULOSE-BISPHOSPHATASE-RXN SEDOHEPTULOSE-BISPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Gene == Gene Tiso_gene_9423 == * right end position: ** 3805 * transcription direction: ** NEGATIVE * left end position: ** 1170 * centisome position: ** 12.5...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SEDOHEPTULOSE-BISPHOSPHATASE-RXN SEDOHEPTULOSE-BISPHOSPHATASE-RXN] ==
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== Gene Tiso_gene_9423 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3805
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* common name:
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* transcription direction:
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** sedoheptulose-_-bisphosphatase
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** NEGATIVE
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** sbpase
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* left end position:
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* ec number:
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** 1170
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** [http://enzyme.expasy.org/EC/3.1.3.37 EC-3.1.3.37]
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* centisome position:
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** 12.5   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[D-SEDOHEPTULOSE-1-7-P2]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 D-sedoheptulose-1,7-bisphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* Gene: [[Tiso_gene_8226]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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* Gene: [[Tiso_gene_4905]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_16502]]
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* Reaction: [[RXN-12196]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN0-5462]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_9435]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3805}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17461 17461]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1170}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01845 R01845]
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{{#set: centisome position=12.5    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/P23014 P23014]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/P46285 P46285]
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** [http://www.uniprot.org/uniprot/P46283 P46283]
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** [http://www.uniprot.org/uniprot/P46284 P46284]
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** [http://www.uniprot.org/uniprot/O23780 O23780]
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** [http://www.uniprot.org/uniprot/O20252 O20252]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=sedoheptulose-_-bisphosphatase}}
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{{#set: common name=sbpase}}
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{{#set: ec number=EC-3.1.3.37}}
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{{#set: gene associated=Tiso_gene_8226|Tiso_gene_4905|Tiso_gene_16502|Tiso_gene_9435}}
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{{#set: in pathway=CALVIN-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:09, 21 March 2018

Gene Tiso_gene_9423

  • right end position:
    • 3805
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1170
  • centisome position:
    • 12.5
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9423&oldid=46431"