Difference between revisions of "Tiso gene 4685"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-600 RXN-600] == * direction: ** LEFT-TO-RIGHT * common name: ** dihydroflavonol-4-reductase * e...")
(Created page with "Category:Gene == Gene Tiso_gene_4685 == * right end position: ** 8084 * transcription direction: ** POSITIVE * left end position: ** 2619 * centisome position: ** 18.03346...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-600 RXN-600] ==
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== Gene Tiso_gene_4685 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8084
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* common name:
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* transcription direction:
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** dihydroflavonol-4-reductase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.1.1.219 EC-1.1.1.219]
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** 2619
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* centisome position:
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** 18.033464   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[6.3.4.16-RXN]]
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** 2 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[CPD-474]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CPD-590]][c]
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* With common name(s):
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** 2 H+[c] '''+''' 1 NADPH[c] '''+''' 1 (+)-taxifolin[c] '''=>''' 1 NADP+[c] '''+''' 1 (2R,3S,4S)-leucocyanidin[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_15272]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_11016]]
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* Reaction: [[CARBPSYN-RXN]]
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** Source: [[orthology-athaliana]]
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** Source: [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_9503]]
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*** Assignment: automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_9504]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* Reaction: [[GLUTAMIN-RXN]]
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* [[PWY1F-823]], leucopelargonidin and leucocyanidin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-823 PWY1F-823]
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** Source: [[annotation-experimental_annotation]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** Assignment: automated-name-match
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-13202]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14196]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16909]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16910]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-4984]]
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* [[GLUTAMINDEG-PWY]]
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* [[ARGSYN-PWY]]
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* [[PWY-5154]]
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* [[PWY-7400]]
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* [[ARGSYNBSUB-PWY]]
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* [[PWY-7693]]
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* [[PWY-7790]]
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* [[PWY-7791]]
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* [[PWY-5686]]
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* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=8084}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03636 R03636]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=2619}}
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{{#set: common name=dihydroflavonol-4-reductase}}
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{{#set: centisome position=18.033464    }}
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{{#set: ec number=EC-1.1.1.219}}
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{{#set: reaction associated=6.3.4.16-RXN|CARBPSYN-RXN|GLUTAMIN-RXN|RXN-13202|RXN-14196|RXN-16909|RXN-16910}}
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{{#set: gene associated=Tiso_gene_15272|Tiso_gene_11016|Tiso_gene_9503|Tiso_gene_9504}}
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{{#set: pathway associated=PWY-4984|GLUTAMINDEG-PWY|ARGSYN-PWY|PWY-5154|PWY-7400|ARGSYNBSUB-PWY|PWY-7693|PWY-7790|PWY-7791|PWY-5686|CITRULBIO-PWY}}
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{{#set: in pathway=PWY1F-823}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:12, 21 March 2018

Gene Tiso_gene_4685

  • right end position:
    • 8084
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2619
  • centisome position:
    • 18.033464
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4685&oldid=46802"