Difference between revisions of "3-ISOPROPYLMALDEHYDROG-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_5004 == * left end position: ** 1254 * transcription direction: ** POSITIVE * right end position: ** 4160 * centisome position: ** 8.931624...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name:...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_5004 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] ==
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* left end position:
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* direction:
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** 1254
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** REVERSIBLE
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* transcription direction:
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* common name:
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** POSITIVE
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** 3-isopropylmalate dehydrogenase
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* right end position:
+
−
** 4160
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−
* centisome position:
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−
** 8.931624   
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* Synonym(s):
 
* Synonym(s):
 +
** β-isopropylmalic enzyme
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** threo-Ds-3-isopropylmalate dehydrogenase
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATPASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[NAD]][c] '''+''' 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-7100]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 NAD+[c] '''+''' 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 (2S)-2-isopropyl-3-oxosuccinate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_2920]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1254}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10892 10892]
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{{#set: right end position=4160}}
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* LIGAND-RXN:
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{{#set: centisome position=8.931624    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
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{{#set: reaction associated=ATPASE-RXN}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P05644 P05644]
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** [http://www.uniprot.org/uniprot/P05645 P05645]
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** [http://www.uniprot.org/uniprot/Q01987 Q01987]
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** [http://www.uniprot.org/uniprot/Q00412 Q00412]
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** [http://www.uniprot.org/uniprot/P08791 P08791]
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** [http://www.uniprot.org/uniprot/P30125 P30125]
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** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
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** [http://www.uniprot.org/uniprot/O66607 O66607]
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** [http://www.uniprot.org/uniprot/P12010 P12010]
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** [http://www.uniprot.org/uniprot/P04173 P04173]
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** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
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** [http://www.uniprot.org/uniprot/P24098 P24098]
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** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
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** [http://www.uniprot.org/uniprot/P43860 P43860]
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** [http://www.uniprot.org/uniprot/P41019 P41019]
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** [http://www.uniprot.org/uniprot/P54354 P54354]
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** [http://www.uniprot.org/uniprot/Q56268 Q56268]
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** [http://www.uniprot.org/uniprot/P29102 P29102]
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** [http://www.uniprot.org/uniprot/P37412 P37412]
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** [http://www.uniprot.org/uniprot/P23390 P23390]
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** [http://www.uniprot.org/uniprot/P29696 P29696]
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** [http://www.uniprot.org/uniprot/P41766 P41766]
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** [http://www.uniprot.org/uniprot/Q02143 Q02143]
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** [http://www.uniprot.org/uniprot/P34733 P34733]
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** [http://www.uniprot.org/uniprot/P50180 P50180]
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** [http://www.uniprot.org/uniprot/Q12591 Q12591]
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** [http://www.uniprot.org/uniprot/Q12590 Q12590]
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** [http://www.uniprot.org/uniprot/Q12592 Q12592]
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** [http://www.uniprot.org/uniprot/P07139 P07139]
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** [http://www.uniprot.org/uniprot/P41926 P41926]
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** [http://www.uniprot.org/uniprot/P48012 P48012]
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** [http://www.uniprot.org/uniprot/P87256 P87256]
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** [http://www.uniprot.org/uniprot/P87257 P87257]
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** [http://www.uniprot.org/uniprot/P73960 P73960]
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** [http://www.uniprot.org/uniprot/O86504 O86504]
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** [http://www.uniprot.org/uniprot/O85837 O85837]
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** [http://www.uniprot.org/uniprot/P18869 P18869]
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** [http://www.uniprot.org/uniprot/P34738 P34738]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-isopropylmalate dehydrogenase}}
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{{#set: common name=&beta;-isopropylmalic enzyme|threo-Ds-3-isopropylmalate dehydrogenase}}
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{{#set: gene associated=Tiso_gene_2920}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:39, 21 March 2018

Reaction 3-ISOPROPYLMALDEHYDROG-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • 3-isopropylmalate dehydrogenase
  • Synonym(s):
    • β-isopropylmalic enzyme
    • threo-Ds-3-isopropylmalate dehydrogenase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • LEUSYN-PWY, L-leucine biosynthesis: LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered): PWY-6871
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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