Difference between revisions of "RXN3DJ-118"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [h...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3DJ-118 RXN3DJ-118] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * Wit...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3DJ-118 RXN3DJ-118] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
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* common name:
+
−
** ORF
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−
* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.42 EC-1.1.1.42]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[CPD-13612]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD3DJ-82]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADP+[c] '''+''' 1 D-threo-isocitrate[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 NADPH[c] '''+''' 1 CO2[c]
+
** 1 D-erythro-sphinganine[c] '''+''' 1 a long-chain acyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 H+[c] '''+''' 1 a dihydroceramide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* Gene: [[Tiso_gene_18262]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-esiliculosus]]
 
−
* Gene: [[Tiso_gene_10809]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Assignment: EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
+
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
+
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
+
−
** '''7''' reactions found over '''12''' reactions in the full pathway
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−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
+
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** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
+
−
** '''9''' reactions found over '''12''' reactions in the full pathway
+
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''9''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
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** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
+
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** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
+
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** '''7''' reactions found over '''10''' reactions in the full pathway
+
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
+
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267]
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{{#set: in pathway=PWY3DJ-12}}
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* PIR:
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{{#set: reconstruction category=annotation}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294]
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{{#set: reconstruction tool=pathwaytools}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P16100 P16100]
+
−
** [http://www.uniprot.org/uniprot/P33198 P33198]
+
−
** [http://www.uniprot.org/uniprot/P41561 P41561]
+
−
** [http://www.uniprot.org/uniprot/P41562 P41562]
+
−
** [http://www.uniprot.org/uniprot/P50214 P50214]
+
−
** [http://www.uniprot.org/uniprot/P41560 P41560]
+
−
** [http://www.uniprot.org/uniprot/P56063 P56063]
+
−
** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3]
+
−
** [http://www.uniprot.org/uniprot/P21954 P21954]
+
−
** [http://www.uniprot.org/uniprot/P08200 P08200]
+
−
** [http://www.uniprot.org/uniprot/O29610 O29610]
+
−
** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7]
+
−
** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4]
+
−
** [http://www.uniprot.org/uniprot/P39126 P39126]
+
−
** [http://www.uniprot.org/uniprot/P50216 P50216]
+
−
** [http://www.uniprot.org/uniprot/P50215 P50215]
+
−
** [http://www.uniprot.org/uniprot/Q04467 Q04467]
+
−
** [http://www.uniprot.org/uniprot/P50217 P50217]
+
−
** [http://www.uniprot.org/uniprot/P41939 P41939]
+
−
** [http://www.uniprot.org/uniprot/P48735 P48735]
+
−
** [http://www.uniprot.org/uniprot/P53982 P53982]
+
−
** [http://www.uniprot.org/uniprot/P50218 P50218]
+
−
** [http://www.uniprot.org/uniprot/O65853 O65853]
+
−
** [http://www.uniprot.org/uniprot/Q40345 Q40345]
+
−
** [http://www.uniprot.org/uniprot/O14254 O14254]
+
−
** [http://www.uniprot.org/uniprot/O75874 O75874]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.1.1.42}}
+
−
{{#set: gene associated=Tiso_gene_18262|Tiso_gene_10809}}
+
−
{{#set: in pathway=PWY-5913|REDCITCYC|PWY-7268|P23-PWY|P105-PWY|PWY-6969|FERMENTATION-PWY|PWY-6728|PWY-6549|PWY-7254|PWY-7124|TCA}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:14, 21 March 2018

Reaction RXN3DJ-118

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY3DJ-12, ceramide de novo biosynthesis: PWY3DJ-12
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN3DJ-118&oldid=47085"