Difference between revisions of "Tiso gene 1369"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10654 RXN-10654] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase * ec num...")
(Created page with "Category:Gene == Gene Tiso_gene_1369 == * right end position: ** 23172 * transcription direction: ** POSITIVE * left end position: ** 19332 * centisome position: ** 80.395...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10654 RXN-10654] ==
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== Gene Tiso_gene_1369 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 23172
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* common name:
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* transcription direction:
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** 3-oxoacyl-synthase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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** 19332
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* centisome position:
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** 80.395905   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[AIRS-RXN]]
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** 1 [[Cis-Delta5-dodecenoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[3-oxo-cis-D7-tetradecenoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 a (5Z)-dodec-5-enoyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a 3-oxo-cis-Δ7-tetradecenoyl-[acp][c] '''+''' 1 CO2[c]
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** Source: [[orthology-synechocystis]]
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* Reaction: [[FGFTm]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[FPGFTm]]
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* Gene: [[Tiso_gene_19302]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[GLYRIBONUCSYN-RXN]]
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* Gene: [[Tiso_gene_15991]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_5939]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_14485]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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== Pathways ==
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== Pathways associated ==
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* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6282 PWY-6282]
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* [[PWY-6121]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6122]]
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== Reconstruction information  ==
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* [[PWY-6277]]
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=23172}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: left end position=19332}}
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{{#set: gene associated=Tiso_gene_19302|Tiso_gene_15991|Tiso_gene_5939|Tiso_gene_14485}}
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{{#set: centisome position=80.395905    }}
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{{#set: in pathway=PWY-6282}}
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{{#set: reaction associated=AIRS-RXN|FGFTm|FPGFTm|GLYRIBONUCSYN-RXN}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: pathway associated=PWY-6121|PWY-6122|PWY-6277}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:15, 21 March 2018

Gene Tiso_gene_1369

  • right end position:
    • 23172
  • transcription direction:
    • POSITIVE
  • left end position:
    • 19332
  • centisome position:
    • 80.395905
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1369&oldid=47220"