Difference between revisions of "RXN-12625"

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(Created page with "Category:Gene == Gene Tiso_gene_1154 == * right end position: ** 8866 * transcription direction: ** POSITIVE * left end position: ** 3416 * centisome position: ** 11.79273...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12625 RXN-12625] == * direction: ** LEFT-TO-RIGHT * common name: ** N,N'-diacetylchitobiose &be...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_1154 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12625 RXN-12625] ==
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* right end position:
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* direction:
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** 8866
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** N,N'-diacetylchitobiose β-N-acetylglucosaminidase
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* left end position:
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** beta-hexosaminidase
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** 3416
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/3.2.1.52 EC-3.2.1.52]
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** 11.792730   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]]
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* With identifiers:
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** Source: [[annotation-experimental_annotation]]
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** 1 [[CHITOBIOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[N-acetyl-D-glucosamine]][c]
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*** Assignment: automated-name-match
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* With common name(s):
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** 1 N,N'-diacetylchitobiose[c] '''+''' 1 H2O[c] '''=>''' 2 N-acetyl-D-glucosamine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_1129]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_14122]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[GLUTAMATE-SYNTHASE-NADH-RXN]]
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** Source: [[orthology-synechocystis]]
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* Reaction: [[GLUTAMATESYN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-athaliana]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[GLUTAMIN-RXN]]
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* [[PWY-7822]], chitin degradation III (Serratia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7822 PWY-7822]
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** Source: [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-6902]], chitin degradation II (Vibrio): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6902 PWY-6902]
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** Source: [[annotation-experimental_annotation]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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** Source: [[orthology-esiliculosus]]
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* Category: [[orthology]]
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* Reaction: [[GLUTDEHYD-RXN]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-12878]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[GLUTAMINEFUM-PWY]]
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* [[GLUTAMINDEG-PWY]]
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* [[PWY-5913]]
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* [[PWY490-3]]
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* [[GLUTSYN-PWY]]
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* [[PWY-4341]]
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* [[PWY-5675]]
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* [[PWY-6549]]
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* [[PWY-6964]]
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* [[GLUGLNSYN-PWY]]
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* [[GLUTSYNIII-PWY]]
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* [[CITRULBIO-PWY]]
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* [[PWY-6963]]
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== External links  ==
 
== External links  ==
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{{#set: right end position=8866}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30674 30674]
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{{#set: left end position=3416}}
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* LIGAND-RXN:
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{{#set: centisome position=11.792730    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00022 R00022]
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{{#set: reaction associated=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN|GLUTAMATE-SYNTHASE-NADH-RXN|GLUTAMATESYN-RXN|GLUTAMIN-RXN|GLUTDEHYD-RXN|RXN-12878}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=GLUTAMINEFUM-PWY|GLUTAMINDEG-PWY|PWY-5913|PWY490-3|GLUTSYN-PWY|PWY-4341|PWY-5675|PWY-6549|PWY-6964|GLUGLNSYN-PWY|GLUTSYNIII-PWY|CITRULBIO-PWY|PWY-6963}}
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{{#set: common name=N,N'-diacetylchitobiose β-N-acetylglucosaminidase}}
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{{#set: common name=beta-hexosaminidase}}
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{{#set: ec number=EC-3.2.1.52}}
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{{#set: gene associated=Tiso_gene_1129|Tiso_gene_14122}}
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{{#set: in pathway=PWY-7822|PWY-6902}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:15, 21 March 2018

Reaction RXN-12625

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • N,N'-diacetylchitobiose β-N-acetylglucosaminidase
    • beta-hexosaminidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7822, chitin degradation III (Serratia): PWY-7822
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6902, chitin degradation II (Vibrio): PWY-6902
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12625&oldid=47224"