Difference between revisions of "PWY-4381"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.148-RXN 2.7.1.148-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-diphosphocytidyl-...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.148-RXN 2.7.1.148-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 4-diphosphocytidyl-2-c-methyl-d-erythritol_kinase
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** fatty acid biosynthesis initiation I
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.148 EC-2.7.1.148]
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* Synonym(s):
 
* Synonym(s):
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** de novo fatty acid biosynthesis, initial reactions
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''3''' reactions in the full pathway
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** 1 [[4-CYTIDINE-5-DIPHOSPHO-2-C]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''+''' 1 [[PROTON]][c]
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* [[2.3.1.180-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_15991]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_13463]]
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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** IN-SILICO_ANNOTATION
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** 4 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_2812]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_3800]]
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***EC-NUMBER
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*** [[Tiso_gene_5029]]
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_7965]]
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** [[pantograph]]-[[synechocystis]]
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** 5 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-athaliana]]
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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*** [[manual-primary_network]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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** 7 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_10876]]
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* [[orthology]]:
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*** [[Tiso_gene_136]]
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** [[pantograph]]:
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*** [[Tiso_gene_19309]]
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*** [[creinhardtii]]
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*** [[Tiso_gene_135]]
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*** [[synechocystis]]
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*** [[Tiso_gene_18460]]
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*** [[athaliana]]
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*** [[Tiso_gene_500]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_13394]]
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* [[manual]]:
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** 5 reconstruction source(s) associated:
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** [[primary_network]]
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*** [[annotation-experimental_annotation]]
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* [[annotation]]:
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*** [[manual-primary_network]]
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** [[pathwaytools]]:
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*** [[annotation-in-silico_annotation]]
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*** [[experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** [[in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18437 18437]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-4381 PWY-4381]
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* LIGAND-RXN:
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* ARACYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R05634 R05634]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-4381 PWY-4381]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=4-diphosphocytidyl-2-c-methyl-d-erythritol_kinase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: ec number=EC-2.7.1.148}}
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{{#set: common name=fatty acid biosynthesis initiation I}}
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{{#set: gene associated=Tiso_gene_13463}}
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{{#set: common name=de novo fatty acid biosynthesis, initial reactions}}
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{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
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{{#set: reaction found=3}}
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{{#set: reconstruction category=orthology}}
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{{#set: total reaction=3}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:07, 21 March 2018

Pathway PWY-4381

  • taxonomic range:
  • common name:
    • fatty acid biosynthesis initiation I
  • Synonym(s):
    • de novo fatty acid biosynthesis, initial reactions

Reaction(s) found

3 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-4381&oldid=39641"