Difference between revisions of "DTDPKIN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9521 RXN-9521] == * direction: ** LEFT-TO-RIGHT * common name: ** trans hex-2-enoyl-[acp] reduc...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_dipho...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPKIN-RXN DTDPKIN-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** ORF |
− | ** | + | ** nucleoside_diphosphate_kinase |
+ | ** adenylate_kinase_domain-containing_protein_1 | ||
* ec number: | * ec number: | ||
− | + | ** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6] | |
− | + | ||
− | + | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 ATP[c] '''+''' 1 dTDP[c] '''=>''' 1 ADP[c] '''+''' 1 dTTP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_18224]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
− | * [[ | + | * Gene: [[Tiso_gene_16529]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
− | * [[ | + | ** Source: [[annotation-experimental_annotation]] |
− | ** | + | *** Assignment: EC-NUMBER |
− | ***EC-NUMBER | + | ** Source: [[orthology-athaliana]] |
− | * [[ | + | ** Source: [[orthology-synechocystis]] |
− | ** | + | ** Source: [[orthology-esiliculosus]] |
− | ***EC-NUMBER | + | * Gene: [[Tiso_gene_195]] |
− | * [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | ** | + | *** Assignment: EC-NUMBER |
− | ***EC-NUMBER | + | * Gene: [[Tiso_gene_17271]] |
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_17272]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_9290]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210] |
− | ** ''' | + | ** '''8''' reactions found over '''8''' reactions in the full pathway |
+ | * [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187] | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] | ||
+ | ** '''12''' reactions found over '''17''' reactions in the full pathway | ||
+ | * [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * [[ | + | * Category: [[orthology]] |
− | ** [[ | + | ** Source: [[orthology-athaliana]] |
− | * [[ | + | *** Tool: [[pantograph]] |
− | ** [[ | + | ** Source: [[orthology-synechocystis]] |
− | *** [[in-silico_annotation]] | + | *** Tool: [[pantograph]] |
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[manual]] | ||
+ | ** Source: [[manual-primary_network]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27682 27682] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: common name= | + | {{#set: common name=ORF}} |
− | {{#set: common name= | + | {{#set: common name=nucleoside_diphosphate_kinase}} |
− | {{#set: | + | {{#set: common name=adenylate_kinase_domain-containing_protein_1}} |
− | + | {{#set: ec number=EC-2.7.4.6}} | |
− | + | {{#set: gene associated=Tiso_gene_18224|Tiso_gene_16529|Tiso_gene_195|Tiso_gene_17271|Tiso_gene_17272|Tiso_gene_9290}} | |
− | {{#set: ec number=EC-2. | + | {{#set: in pathway=PWY-7210|PWY-7198|PWY-7184|PWY-7187|PWY-7197|PWY0-166|PWY-6545}} |
− | {{#set: gene associated= | + | {{#set: reconstruction category=orthology|manual|annotation}} |
− | {{#set: in pathway=PWY- | + | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}} |
− | {{#set: reconstruction category=manual}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
− | {{#set: reconstruction source=primary_network | + | |
− | + | ||
− | {{#set: reconstruction tool=pathwaytools | + | |
− | + |
Latest revision as of 19:40, 21 March 2018
Contents
Reaction DTDPKIN-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ORF
- nucleoside_diphosphate_kinase
- adenylate_kinase_domain-containing_protein_1
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 ATP[c] + 1 dTDP[c] => 1 ADP[c] + 1 dTTP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_18224
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_16529
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-athaliana
- Source: orthology-synechocystis
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_195
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_17271
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_17272
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_9290
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
- 8 reactions found over 8 reactions in the full pathway
- PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
- 6 reactions found over 7 reactions in the full pathway
- PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
- 9 reactions found over 9 reactions in the full pathway
- PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
- 4 reactions found over 7 reactions in the full pathway
- PWY-7197, pyrimidine deoxyribonucleotide phosphorylation: PWY-7197
- 4 reactions found over 4 reactions in the full pathway
- PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
- 12 reactions found over 17 reactions in the full pathway
- PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
- 8 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links