Difference between revisions of "PYRAMKIN-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-147 RXN1F-147] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAMKIN-RXN PYRAMKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxal_kinase * ec...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAMKIN-RXN PYRAMKIN-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
| + | * common name: | ||
| + | ** pyridoxal_kinase | ||
* ec number: | * ec number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAMINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 ATP[c] '''+''' 1 pyridoxamine[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 pyridoxamine 5'-phosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * Gene: [[ | + | * Gene: [[Tiso_gene_6106]] |
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
** Source: [[orthology-athaliana]] | ** Source: [[orthology-athaliana]] | ||
** Source: [[orthology-esiliculosus]] | ** Source: [[orthology-esiliculosus]] | ||
** Source: [[orthology-creinhardtii]] | ** Source: [[orthology-creinhardtii]] | ||
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== Pathways == | == Pathways == | ||
| − | * [[PWY- | + | * [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204] |
| − | ** ''' | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
| + | * [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY] | ||
| + | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| Line 41: | Line 36: | ||
** Source: [[orthology-esiliculosus]] | ** Source: [[orthology-esiliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25104 25104] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493] |
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: ec number=EC- | + | {{#set: common name=pyridoxal_kinase}} |
| − | {{#set: gene associated= | + | {{#set: ec number=EC-2.7.1.35}} |
| − | {{#set: in pathway=PWY- | + | {{#set: gene associated=Tiso_gene_6106}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: in pathway=PWY-7204|PLPSAL-PWY}} |
| − | {{#set: reconstruction source=orthology- | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}} |
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 20:22, 21 March 2018
Contents
Reaction PYRAMKIN-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- pyridoxal_kinase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 ATP[c] + 1 PYRIDOXAMINE[c] => 1 ADP[c] + 1 PROTON[c] + 1 PYRIDOXAMINE-5P[c]
- With common name(s):
- 1 ATP[c] + 1 pyridoxamine[c] => 1 ADP[c] + 1 H+[c] + 1 pyridoxamine 5'-phosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_6106
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-athaliana
- Source: orthology-esiliculosus
- Source: orthology-creinhardtii
- Source: annotation-in-silico_annotation
Pathways
- PWY-7204, pyridoxal 5'-phosphate salvage II (plants): PWY-7204
- 8 reactions found over 9 reactions in the full pathway
- PLPSAL-PWY, pyridoxal 5'-phosphate salvage I: PLPSAL-PWY
- 5 reactions found over 5 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-creinhardtii
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
