Difference between revisions of "RXN-8028"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-478 RXN66-478] == * direction: ** LEFT-TO-RIGHT * common name: ** phytol dehydrogenase ** pol...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8028 RXN-8028] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/5....")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-478 RXN66-478] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8028 RXN-8028] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** phytol dehydrogenase
 
−
** polyketide_synthase
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
+
** [http://enzyme.expasy.org/EC/5.5.1.18 EC-5.5.1.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[PHYTOL]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-14926]][c]
+
** 1 [[CPD1F-115]][c] '''=>''' 1 [[CPD-7414]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 phytol[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 phytenal[c]
+
** 1 δ-carotene[c] '''=>''' 1 ε-carotene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_7649]]
+
* Gene: [[Tiso_gene_11980]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Assignment: EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* Gene: [[Tiso_gene_6563]]
+
** Source: [[orthology-creinhardtii]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_6562]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_5425]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Tiso_gene_5424]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-389]], phytol degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-389 PWY66-389]
+
* [[PWY-5175]], lactucaxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5175 PWY-5175]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07840 R07840]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=phytol dehydrogenase}}
+
{{#set: ec number=EC-5.5.1.18}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: gene associated=Tiso_gene_11980}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-5175}}
−
{{#set: ec number=EC-1.1.1.1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: gene associated=Tiso_gene_7649|Tiso_gene_6563|Tiso_gene_6562|Tiso_gene_5425|Tiso_gene_5424}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
−
{{#set: in pathway=PWY66-389}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 20:23, 21 March 2018

Reaction RXN-8028

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 δ-carotene[c] => 1 ε-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5175, lactucaxanthin biosynthesis: PWY-5175
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




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