Difference between revisions of "PNKIN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DIMETHYL-GLYCINE DIMETHYL-GLYCINE] == * smiles: ** C[N+](CC([O-])=O)C * inchi key: ** InChIKey=...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxal_kinase * ec numbe...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DIMETHYL-GLYCINE DIMETHYL-GLYCINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] ==
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* smiles:
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* direction:
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** C[N+](CC([O-])=O)C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=FFDGPVCHZBVARC-UHFFFAOYSA-N
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* common name:
 
* common name:
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** dimethylglycine
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** pyridoxal_kinase
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* molecular weight:
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* ec number:
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** 103.121   
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** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
 
* Synonym(s):
 
* Synonym(s):
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** N,N-dimethylglycine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[DIMETHYLGLYCINE-DEHYDROGENASE-RXN]]
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* With identifiers:
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* [[RXN66-576]]
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** 1 [[PYRIDOXINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXINE-5P]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 pyridoxine[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 pyridoxine 5'-phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_6106]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 1118-68-9
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25108 25108]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6971056 6971056]
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* LIGAND-RXN:
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* HMDB : HMDB00092
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** [http://www.genome.jp/dbget-bin/www_bget?R01909 R01909]
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01026 C01026]
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{{#set: common name=pyridoxal_kinase}}
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* CHEBI:
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{{#set: ec number=EC-2.7.1.35}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58251 58251]
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{{#set: gene associated=Tiso_gene_6106}}
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* METABOLIGHTS : MTBLC58251
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{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY}}
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{{#set: smiles=C[N+](CC([O-])=O)C}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=FFDGPVCHZBVARC-UHFFFAOYSA-N}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: common name=dimethylglycine}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: molecular weight=103.121    }}
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{{#set: common name=N,N-dimethylglycine}}
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{{#set: consumed by=DIMETHYLGLYCINE-DEHYDROGENASE-RXN|RXN66-576}}
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Latest revision as of 19:41, 21 March 2018

Reaction PNKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pyridoxal_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyridoxine[c] + 1 ATP[c] => 1 ADP[c] + 1 H+[c] + 1 pyridoxine 5'-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants): PWY-7204
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 6 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I: PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PNKIN-RXN&oldid=43187"