Difference between revisions of "PWY-7817"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** uroporphy...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
 
(4 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
 
* common name:
 
* common name:
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** uroporphyrinogen_decarboxylase
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** type I lipoteichoic acid biosynthesis (S. aureus)
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** uroporphyrinogen_chloroplast
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''16''' reactions in the full pathway
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** 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 4 [[CARBON-DIOXIDE]][c]
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* [[CDPDIGLYSYN-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 4 H+[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 1 coproporphyrinogen III[c] '''+''' 4 CO2[c]
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*** [[Tiso_gene_3522]]
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*** [[Tiso_gene_2311]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_3523]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* [[Tiso_gene_18744]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[DIACYLGLYKIN-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 3 associated gene(s):
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* [[Tiso_gene_5173]]
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*** [[Tiso_gene_14560]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_1163]]
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***EC-NUMBER
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*** [[Tiso_gene_1420]]
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** EXPERIMENTAL_ANNOTATION
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** 2 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* [[GLUC1PURIDYLTRANS-RXN]]
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** [[pantograph]]-[[creinhardtii]]
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** 14 associated gene(s):
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* [[Tiso_gene_19684]]
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*** [[Tiso_gene_6459]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_4816]]
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***EC-NUMBER
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*** [[Tiso_gene_17531]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_5879]]
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***EC-NUMBER
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*** [[Tiso_gene_17566]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_16930]]
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* [[Tiso_gene_18743]]
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*** [[Tiso_gene_14796]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_9110]]
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***EC-NUMBER
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*** [[Tiso_gene_13477]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_7440]]
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***EC-NUMBER
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*** [[Tiso_gene_11401]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_6457]]
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== Pathways  ==
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*** [[Tiso_gene_6458]]
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* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
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*** [[Tiso_gene_7102]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** 4 reconstruction source(s) associated:
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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*** [[annotation-experimental_annotation]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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*** [[annotation-in-silico_annotation]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
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* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
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* [[PGPPHOSPHA-RXN]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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** 1 associated gene(s):
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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*** [[Tiso_gene_18092]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
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*** [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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* [[PHOSPHAGLYPSYN-RXN]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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** 0 associated gene:
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* [[orthology]]:
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]:
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* [[RXN-15117]]
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*** [[creinhardtii]]
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** 12 associated gene(s):
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*** [[synechocystis]]
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*** [[Tiso_gene_3385]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_412]]
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* [[manual]]:
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*** [[Tiso_gene_15372]]
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** [[primary_network]]
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*** [[Tiso_gene_12341]]
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* [[annotation]]:
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*** [[Tiso_gene_19034]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_10734]]
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*** [[experimental_annotation]]
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*** [[Tiso_gene_7966]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_9428]]
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*** [[Tiso_gene_15050]]
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*** [[Tiso_gene_11792]]
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*** [[Tiso_gene_17894]]
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*** [[Tiso_gene_10863]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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* [[RXN-16648]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6390]]
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*** [[Tiso_gene_322]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-synechocystis]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18013 RXN-18013]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18014 RXN-18014]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18035 RXN-18035]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18036 RXN-18036]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18037 RXN-18037]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18038 RXN-18038]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18039 RXN-18039]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-315 TRANS-RXN-315]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-316 TRANS-RXN-316]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-1239}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865]
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{{#set: common name=type I lipoteichoic acid biosynthesis (S. aureus)}}
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* LIGAND-RXN:
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{{#set: reaction found=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
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{{#set: total reaction=16}}
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* UNIPROT:
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{{#set: completion rate=44.0}}
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** [http://www.uniprot.org/uniprot/P06132 P06132]
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** [http://www.uniprot.org/uniprot/P16891 P16891]
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** [http://www.uniprot.org/uniprot/P32395 P32395]
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** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
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** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
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** [http://www.uniprot.org/uniprot/P29680 P29680]
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** [http://www.uniprot.org/uniprot/P32347 P32347]
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** [http://www.uniprot.org/uniprot/P32920 P32920]
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** [http://www.uniprot.org/uniprot/P54224 P54224]
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** [http://www.uniprot.org/uniprot/O81220 O81220]
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** [http://www.uniprot.org/uniprot/P70697 P70697]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=uroporphyrinogen_decarboxylase}}
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{{#set: common name=uroporphyrinogen_chloroplast}}
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{{#set: ec number=EC-4.1.1.37}}
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{{#set: gene associated=Tiso_gene_18744|Tiso_gene_5173|Tiso_gene_19684|Tiso_gene_18743}}
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{{#set: in pathway=HEMESYN2-PWY|PWY0-1415|HEME-BIOSYNTHESIS-II|PWY-5531|CHLOROPHYLL-SYN|PWY-7766|PWY-7159}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:42, 21 March 2018

Pathway PWY-7817

  • taxonomic range:
  • common name:
    • type I lipoteichoic acid biosynthesis (S. aureus)
  • Synonym(s):

Reaction(s) found

7 reactions found over 16 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7817&oldid=43302"