Difference between revisions of "RXN-12729"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18206 RXN-18206] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydrogenas...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12729 RXN-12729] == * direction: ** LEFT-TO-RIGHT * common name: ** cystathione_gamma * ec numb...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12729 RXN-12729] == |
* direction: | * direction: | ||
| − | ** | + | ** LEFT-TO-RIGHT |
* common name: | * common name: | ||
| − | ** | + | ** cystathione_gamma |
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/4.4.1.8 EC-4.4.1.8] | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CPD-13717]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[SELENOHOMOCYSTEINE]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 L-selenocystathionine[c] '''+''' 1 H2O[c] '''=>''' 1 pyruvate[c] '''+''' 1 ammonium[c] '''+''' 1 seleno-L-homocysteine[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[Tiso_gene_3732]] |
| − | ** | + | ** Source: [[annotation-in-silico_annotation]] |
| − | ***EC-NUMBER | + | *** Assignment: EC-NUMBER |
| + | ** Source: [[annotation-experimental_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-creinhardtii]] | ||
| + | ** Source: [[orthology-creinhardtii]] | ||
== Pathways == | == Pathways == | ||
| − | * [[ | + | * [[PWY-6936]], seleno-amino acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936] |
| − | ** ''' | + | ** '''4''' reactions found over '''5''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[annotation]]: | + | * Category: [[orthology]] |
| − | ** [[pathwaytools]]: | + | ** Source: [[orthology-creinhardtii]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
| + | ** Source: [[annotation-experimental_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: direction= | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: common name= | + | {{#set: common name=cystathione_gamma}} |
| − | {{#set: gene associated= | + | {{#set: ec number=EC-4.4.1.8}} |
| − | {{#set: in pathway= | + | {{#set: gene associated=Tiso_gene_3732}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: in pathway=PWY-6936}} |
| − | {{#set: reconstruction | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction | + | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|annotation-experimental_annotation}} |
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 19:44, 21 March 2018
Contents
Reaction RXN-12729
- direction:
- LEFT-TO-RIGHT
- common name:
- cystathione_gamma
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CPD-13717[c] + 1 WATER[c] => 1 PYRUVATE[c] + 1 AMMONIUM[c] + 1 SELENOHOMOCYSTEINE[c]
- With common name(s):
- 1 L-selenocystathionine[c] + 1 H2O[c] => 1 pyruvate[c] + 1 ammonium[c] + 1 seleno-L-homocysteine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_3732
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-creinhardtii
- Source: orthology-creinhardtii
- Source: annotation-in-silico_annotation
Pathways
- PWY-6936, seleno-amino acid biosynthesis: PWY-6936
- 4 reactions found over 5 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-creinhardtii
- Tool: pantograph
- Source: orthology-creinhardtii
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
