Difference between revisions of "PWY-6893"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5467 RXN-5467] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6893 PWY-6893] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5467 RXN-5467] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6893 PWY-6893] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/2.4.1.259 EC-2.4.1.259]
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** thiamine diphosphate biosynthesis II (Bacillus)
 
* Synonym(s):
 
* Synonym(s):
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** vitamin B1 biosynthesis II
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** thiamin diphosphate biosynthesis II (Bacillus)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''2''' reactions in the full pathway
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** 1 [[CPD-5165]][c] '''+''' 1 [[CPD-171]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DOLICHOLP]][c] '''+''' 1 [[CPD-5166]][c]
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* [[RXN-12610]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c] '''+''' 1 a dolichyl β-D-mannosyl phosphate[c] '''=>''' 1 H+[c] '''+''' 1 a dolichyl phosphate[c] '''+''' 1 α-D-Man-(1→2)-α-D-Man-(1→2)-α-D-Man-(1→3)-[α-D-Man-(1→2)-α-D-Man-(1→3)-α-D-Man-(1→6)]-β-D-Man-(1→4)-β-D-GlcNAc-(1→4)-α-D-GlcNAc-diphosphodolichol[c]
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*** [[Tiso_gene_2159]]
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*** [[Tiso_gene_10320]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_2160]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Tiso_gene_8232]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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== Reaction(s) not found ==
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=THI-P-KIN-RXN THI-P-KIN-RXN]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** '''19''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29534 29534]
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{{#set: common name=thiamine diphosphate biosynthesis II (Bacillus)}}
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* LIGAND-RXN:
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{{#set: common name=vitamin B1 biosynthesis II|thiamin diphosphate biosynthesis II (Bacillus)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06259 R06259]
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{{#set: reaction found=1}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=2}}
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{{#set: ec number=EC-2.4.1.259}}
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{{#set: completion rate=50.0}}
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{{#set: gene associated=Tiso_gene_8232}}
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{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:44, 21 March 2018

Pathway PWY-6893

  • taxonomic range:
  • common name:
    • thiamine diphosphate biosynthesis II (Bacillus)
  • Synonym(s):
    • vitamin B1 biosynthesis II
    • thiamin diphosphate biosynthesis II (Bacillus)

Reaction(s) found

1 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6893&oldid=43527"