Difference between revisions of "RXN-11839"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-AMINOTRANSFERASE-RXN TYROSINE-AMINOTRANSFERASE-RXN] == * direction: ** REVERSIBLE * ec num...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_pseudouridinesynthase...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE-AMINOTRANSFERASE-RXN TYROSINE-AMINOTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11839 RXN-11839] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** trna_pseudouridinesynthase
 +
** trna_pseudouridine_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.57 EC-2.6.1.57]
+
** [http://enzyme.expasy.org/EC/5.4.99.25 EC-5.4.99.25]
−
** [http://enzyme.expasy.org/EC/2.6.1.5 EC-2.6.1.5]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TYR]][c] '''<=>''' 1 [[P-HYDROXY-PHENYLPYRUVATE]][c] '''+''' 1 [[GLT]][c]
+
** 1 [[tRNA-uridine55]][c] '''=>''' 1 [[tRNA-pseudouridine55]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxoglutarate[c] '''+''' 1 L-tyrosine[c] '''<=>''' 1 4-hydroxyphenylpyruvate[c] '''+''' 1 L-glutamate[c]
+
** 1 a uridine55 in tRNA[c] '''=>''' 1 a pseudouridine55 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10680]]
+
* Gene: [[Tiso_gene_2988]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_4021]]
−
* [[Tiso_gene_17718]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_6815]]
+
* Gene: [[Tiso_gene_9833]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11913]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_19622]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_18959]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_4020]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY3O-4108]], L-tyrosine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-4108 PWY3O-4108]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5886]], 4-hydroxyphenylpyruvate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5886 PWY-5886]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5151]], L-tyrosine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5151 PWY-5151]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7518]], atromentin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7518 PWY-7518]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TYRSYN]], L-tyrosine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=TYRSYN TYRSYN]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-3581]], (S)-reticuline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3581 PWY-3581]
 
−
** '''3''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7514]], L-tyrosine degradation IV (to 4-methylphenol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7514 PWY-7514]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5048]], rosmarinic acid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5048 PWY-5048]
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15093 15093]
+
{{#set: common name=trna_pseudouridinesynthase}}
−
* LIGAND-RXN:
+
{{#set: common name=trna_pseudouridine_synthase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00734 R00734]
+
{{#set: ec number=EC-5.4.99.25}}
−
* UNIPROT:
+
{{#set: gene associated=Tiso_gene_2988|Tiso_gene_4021|Tiso_gene_9833|Tiso_gene_11913|Tiso_gene_19622|Tiso_gene_18959|Tiso_gene_4020}}
−
** [http://www.uniprot.org/uniprot/P74861 P74861]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P95468 P95468]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
+
−
** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
+
−
** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
+
−
** [http://www.uniprot.org/uniprot/O58489 O58489]
+
−
** [http://www.uniprot.org/uniprot/O59096 O59096]
+
−
** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
+
−
** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
+
−
** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
+
−
** [http://www.uniprot.org/uniprot/Q02636 Q02636]
+
−
** [http://www.uniprot.org/uniprot/O84642 O84642]
+
−
** [http://www.uniprot.org/uniprot/P17735 P17735]
+
−
** [http://www.uniprot.org/uniprot/Q7M4A9 Q7M4A9]
+
−
** [http://www.uniprot.org/uniprot/P04693 P04693]
+
−
** [http://www.uniprot.org/uniprot/P04694 P04694]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.6.1.57}}
+
−
{{#set: ec number=EC-2.6.1.5}}
+
−
{{#set: gene associated=Tiso_gene_10680|Tiso_gene_17718|Tiso_gene_6815}}
+
−
{{#set: in pathway=PWY3O-4108|TYRFUMCAT-PWY|PWY-5886|PWY-5151|PWY-7518|TYRSYN|PWY-3581|PWY-7514|PWY-5754|PWY-5048}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+

Latest revision as of 19:45, 21 March 2018

Reaction RXN-11839

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trna_pseudouridinesynthase
    • trna_pseudouridine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11839&oldid=43598"