Difference between revisions of "GLURS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutaminase ** aspara...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glutamyl-trna_synthe...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glutaminase
+
** ORF
−
** asparagine_synthetase
+
** glutamyl-trna_synthetase
−
** glutamine_amidotransferase
+
−
** ferredoxin-dependent_glutamate_synthase
+
−
** ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits
+
−
** carbamoyl_phosphate_synthetase
+
−
** asparagine_synthetase_domaincontaining_protein_putat
+
−
** glutamate_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.1.38 EC-3.5.1.38]
+
** [http://enzyme.expasy.org/EC/6.1.1.17 EC-6.1.1.17]
−
** [http://enzyme.expasy.org/EC/3.5.1.2 EC-3.5.1.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 1 [[GLT]][c] '''+''' 1 [[GLT-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-GLT-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamine[c] '''+''' 1 H2O[c] '''=>''' 1 L-glutamate[c] '''+''' 1 ammonium[c]
+
** 1 L-glutamate[c] '''+''' 1 a tRNAglu[c] '''+''' 1 ATP[c] '''=>''' 1 an L-glutamyl-[tRNAGlu][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17058]]
+
* Gene: [[Tiso_gene_5379]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17333]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_19661]]
+
* Gene: [[Tiso_gene_5046]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_4976]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4685]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4975]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_2973]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11511]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1154]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3435]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_3434]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_1773]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_6657]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7495]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2581]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLUTAMINDEG-PWY]], L-glutamine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINDEG-PWY GLUTAMINDEG-PWY]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
+
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[experimental_annotation]]
+
* Category: [[annotation]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15889 15889]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23540 23540]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00256 R00256]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05578 R05578]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P10172 P10172]
+
** [http://www.uniprot.org/uniprot/P47700 P47700]
−
** [http://www.uniprot.org/uniprot/P28492 P28492]
+
** [http://www.uniprot.org/uniprot/O52914 O52914]
 +
** [http://www.uniprot.org/uniprot/P43818 P43818]
 +
** [http://www.uniprot.org/uniprot/O26157 O26157]
 +
** [http://www.uniprot.org/uniprot/Q9ZLJ1 Q9ZLJ1]
 +
** [http://www.uniprot.org/uniprot/O25360 O25360]
 +
** [http://www.uniprot.org/uniprot/O51345 O51345]
 +
** [http://www.uniprot.org/uniprot/Q9Z7Z3 Q9Z7Z3]
 +
** [http://www.uniprot.org/uniprot/P96551 P96551]
 +
** [http://www.uniprot.org/uniprot/O67271 O67271]
 +
** [http://www.uniprot.org/uniprot/O83679 O83679]
 +
** [http://www.uniprot.org/uniprot/Q9ZLZ7 Q9ZLZ7]
 +
** [http://www.uniprot.org/uniprot/Q9PP78 Q9PP78]
 +
** [http://www.uniprot.org/uniprot/Q9CDZ7 Q9CDZ7]
 +
** [http://www.uniprot.org/uniprot/O84451 O84451]
 +
** [http://www.uniprot.org/uniprot/Q9X2I8 Q9X2I8]
 +
** [http://www.uniprot.org/uniprot/Q9JWT4 Q9JWT4]
 +
** [http://www.uniprot.org/uniprot/Q9ZDK3 Q9ZDK3]
 +
** [http://www.uniprot.org/uniprot/Q9X172 Q9X172]
 +
** [http://www.uniprot.org/uniprot/Q58772 Q58772]
 +
** [http://www.uniprot.org/uniprot/Q9ZCT8 Q9ZCT8]
 +
** [http://www.uniprot.org/uniprot/P59690 P59690]
 +
** [http://www.uniprot.org/uniprot/Q43768 Q43768]
 +
** [http://www.uniprot.org/uniprot/Q43794 Q43794]
 +
** [http://www.uniprot.org/uniprot/P46655 P46655]
 +
** [http://www.uniprot.org/uniprot/P48525 P48525]
 +
** [http://www.uniprot.org/uniprot/P75114 P75114]
 +
** [http://www.uniprot.org/uniprot/Q49061 Q49061]
 +
** [http://www.uniprot.org/uniprot/P22249 P22249]
 +
** [http://www.uniprot.org/uniprot/P22250 P22250]
 +
** [http://www.uniprot.org/uniprot/P04805 P04805]
 +
** [http://www.uniprot.org/uniprot/P07814 P07814]
 +
** [http://www.uniprot.org/uniprot/P15189 P15189]
 +
** [http://www.uniprot.org/uniprot/O65253 O65253]
 +
** [http://www.uniprot.org/uniprot/O68055 O68055]
 +
** [http://www.uniprot.org/uniprot/O68142 O68142]
 +
** [http://www.uniprot.org/uniprot/O86528 O86528]
 +
** [http://www.uniprot.org/uniprot/O13775 O13775]
 +
** [http://www.uniprot.org/uniprot/Q9ZFA3 Q9ZFA3]
 +
** [http://www.uniprot.org/uniprot/O82462 O82462]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glutaminase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=asparagine_synthetase}}
+
{{#set: common name=glutamyl-trna_synthetase}}
−
{{#set: common name=glutamine_amidotransferase}}
+
{{#set: ec number=EC-6.1.1.17}}
−
{{#set: common name=ferredoxin-dependent_glutamate_synthase}}
+
{{#set: gene associated=Tiso_gene_5379|Tiso_gene_5046}}
−
{{#set: common name=ferredoxin-dependent_glutamate_fusion_of_large_and_small_subunits}}
+
{{#set: in pathway=TRNA-CHARGING-PWY|PWY-5188}}
−
{{#set: common name=carbamoyl_phosphate_synthetase}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: common name=asparagine_synthetase_domaincontaining_protein_putat}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: common name=glutamate_synthase}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: ec number=EC-3.5.1.38}}
+
−
{{#set: ec number=EC-3.5.1.2}}
+
−
{{#set: gene associated=Tiso_gene_17058|Tiso_gene_17333|Tiso_gene_19661|Tiso_gene_4976|Tiso_gene_4685|Tiso_gene_4975|Tiso_gene_2973|Tiso_gene_11511|Tiso_gene_1154|Tiso_gene_3435|Tiso_gene_3434|Tiso_gene_1773|Tiso_gene_6657|Tiso_gene_7495|Tiso_gene_2581}}
+
−
{{#set: in pathway=GLUTAMINDEG-PWY|CITRULBIO-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:48, 21 March 2018

Reaction GLURS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • glutamyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-glutamate[c] + 1 a tRNAglu[c] + 1 ATP[c] => 1 an L-glutamyl-[tRNAGlu][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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