Difference between revisions of "Tiso gene 284"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETALD-DEHYDROG-RXN ACETALD-DEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec...")
 
(Created page with "Category:Gene == Gene Tiso_gene_284 == * right end position: ** 25515 * transcription direction: ** POSITIVE * left end position: ** 22290 * centisome position: ** 61.0768...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETALD-DEHYDROG-RXN ACETALD-DEHYDROG-RXN] ==
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== Gene Tiso_gene_284 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 25515
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.2.1.10 EC-1.2.1.10]
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** 22290
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* centisome position:
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** 61.076862   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[METHIONINE--TRNA-LIGASE-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[ACETALD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[ACETYL-COA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 coenzyme A[c] '''+''' 1 NAD+[c] '''+''' 1 acetaldehyde[c] '''<=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 acetyl-CoA[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-16165]]
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* [[Tiso_gene_2052]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: ec-number
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_7649]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[TRNA-CHARGING-PWY]]
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== Pathways  ==
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* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5436]], L-threonine degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5436 PWY-5436]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7180]], 2'-deoxy-&alpha;-D-ribose 1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7180 PWY-7180]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5162]], 2-oxopentenoate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5162 PWY-5162]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7085]], triethylamine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7085 PWY-7085]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6587]], pyruvate fermentation to ethanol III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6587 PWY-6587]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PHOSPHONOTASE-PWY]], 2-aminoethylphosphonate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHONOTASE-PWY PHOSPHONOTASE-PWY]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[P161-PWY]], acetylene degradation: [http://metacyc.org/META/NEW-IMAGE?object=P161-PWY P161-PWY]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[ETOH-ACETYLCOA-ANA-PWY]], ethanol degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ETOH-ACETYLCOA-ANA-PWY ETOH-ACETYLCOA-ANA-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5480]], pyruvate fermentation to ethanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5480 PWY-5480]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''9''' reactions found over '''16''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=25515}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23288 23288]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=22290}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00228 R00228]
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{{#set: centisome position=61.076862    }}
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* UNIPROT:
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{{#set: reaction associated=METHIONINE--TRNA-LIGASE-RXN|RXN-16165}}
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** [http://www.uniprot.org/uniprot/Q52434 Q52434]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/P0A9Q7 P0A9Q7]
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** [http://www.uniprot.org/uniprot/P77580 P77580]
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** [http://www.uniprot.org/uniprot/P71866 P71866]
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** [http://www.uniprot.org/uniprot/Q52060 Q52060]
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** [http://www.uniprot.org/uniprot/Q52016 Q52016]
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** [http://www.uniprot.org/uniprot/O85978 O85978]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.2.1.10}}
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{{#set: gene associated=Tiso_gene_2052|Tiso_gene_7649}}
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{{#set: in pathway=PWY4LZ-257|PWY-5436|PWY-7180|PWY-5162|PWY-7085|PWY-6587|PHOSPHONOTASE-PWY|P161-PWY|P122-PWY|ETOH-ACETYLCOA-ANA-PWY|PWY-5480|FERMENTATION-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:08, 21 March 2018

Gene Tiso_gene_284

  • right end position:
    • 25515
  • transcription direction:
    • POSITIVE
  • left end position:
    • 22290
  • centisome position:
    • 61.076862
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_284&oldid=39732"