Difference between revisions of "CPD-13792"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11737 RXN-11737] == * direction: ** REVERSIBLE * common name: ** aminotransferase ** aspartate_...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13792 CPD-13792] == * smiles: ** CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)[O-] * common name: ** (7Z,...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11737 RXN-11737] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13792 CPD-13792] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)[O-]
 
* common name:
 
* common name:
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** aminotransferase
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** (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentenoate
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** aspartate_aminotransferase
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* inchi key:
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* ec number:
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** InChIKey=YUFFSWGQGVEMMI-JLNKQSITSA-M
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** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
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* molecular weight:
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** 329.501   
 
* Synonym(s):
 
* Synonym(s):
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** n-3 docosapentaenoic acid
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** clupanodonic acid
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** (7Z,10Z,13Z,16Z,19Z)-docosapentaenoate
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** all-cis-7,10,13,16,19-docosapentaenoate
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** (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoic acid
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** n-3 docosapentaenoate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-CYSTEATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[CPD-380]][c]
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* [[RXN-13446]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 2-oxoglutarate[c] '''+''' 1 L-cysteate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-sulfopyruvate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17809]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_17718]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6815]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_15680]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12889]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13538]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6638]], sulfolactate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6638 PWY-6638]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6643]], coenzyme M biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6643 PWY-6643]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6642]], (R)-cysteate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6642 PWY-6642]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* LIPID_MAPS : LMFA04000044
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** [http://www.genome.jp/dbget-bin/www_bget?R02433 R02433]
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* PUBCHEM:
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{{#set: direction=REVERSIBLE}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=40846589 40846589]
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{{#set: common name=aminotransferase}}
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* HMDB : HMDB06528
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{{#set: common name=aspartate_aminotransferase}}
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* CHEBI:
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{{#set: ec number=EC-2.6.1.1}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=77224 77224]
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{{#set: gene associated=Tiso_gene_17809|Tiso_gene_17718|Tiso_gene_6815|Tiso_gene_15680|Tiso_gene_12889|Tiso_gene_13538}}
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* LIGAND-CPD:
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{{#set: in pathway=PWY-6638|PWY-6643|PWY-6642}}
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** [http://www.genome.jp/dbget-bin/www_bget?C16513 C16513]
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{{#set: reconstruction category=orthology}}
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{{#set: smiles=CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)[O-]}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: common name=(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentenoate}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: inchi key=InChIKey=YUFFSWGQGVEMMI-JLNKQSITSA-M}}
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{{#set: reconstruction category=annotation}}
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{{#set: molecular weight=329.501    }}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=n-3 docosapentaenoic acid|clupanodonic acid|(7Z,10Z,13Z,16Z,19Z)-docosapentaenoate|all-cis-7,10,13,16,19-docosapentaenoate|(7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoic acid|n-3 docosapentaenoate}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: produced by=RXN-13446}}

Latest revision as of 19:51, 21 March 2018

Metabolite CPD-13792

  • smiles:
    • CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)[O-]
  • common name:
    • (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentenoate
  • inchi key:
    • InChIKey=YUFFSWGQGVEMMI-JLNKQSITSA-M
  • molecular weight:
    • 329.501
  • Synonym(s):
    • n-3 docosapentaenoic acid
    • clupanodonic acid
    • (7Z,10Z,13Z,16Z,19Z)-docosapentaenoate
    • all-cis-7,10,13,16,19-docosapentaenoate
    • (7Z,10Z,13Z,16Z,19Z)-docosa-7,10,13,16,19-pentaenoic acid
    • n-3 docosapentaenoate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • LIPID_MAPS : LMFA04000044
  • PUBCHEM:
  • HMDB : HMDB06528
  • CHEBI:
  • LIGAND-CPD:
"CCC=CCC=CCC=CCC=CCC=CCCCCCC(=O)[O-" cannot be used as a page name in this wiki.



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