Difference between revisions of "Tiso gene 92"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONOLACT-RXN 6PGLUCONOLACT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** 6-ph...")
 
(Created page with "Category:Gene == Gene Tiso_gene_92 == * right end position: ** 22089 * transcription direction: ** POSITIVE * left end position: ** 20519 * centisome position: ** 45.38698...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONOLACT-RXN 6PGLUCONOLACT-RXN] ==
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== Gene Tiso_gene_92 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 22089
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** 6-phosphogluconolactonase
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* left end position:
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* ec number:
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** 20519
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** [http://enzyme.expasy.org/EC/3.1.1.31 EC-3.1.1.31]
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* centisome position:
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** 45.38698   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DIHYDROFOLATESYNTH-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[D-6-P-GLUCONO-DELTA-LACTONE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-2961]][c]
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** Source: [[orthology-synechocystis]]
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* With common name(s):
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* Reaction: [[FOLYLPOLYGLUTAMATESYNTH-RXN]]
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** 1 H2O[c] '''+''' 1 6-phospho D-glucono-1,5-lactone[c] '''=>''' 1 H+[c] '''+''' 1 D-gluconate 6-phosphate[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[FORMYLTHFGLUSYNTH-RXN]]
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* [[Tiso_gene_10799]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_5901]]
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* Reaction: [[RXN-6341]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** EXPERIMENTAL_ANNOTATION
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* Reaction: [[RXN0-2921]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: ec-number
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* [[Tiso_gene_15950]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[athaliana]]
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== Pathways associated ==
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** [[pantograph]]-[[athaliana]]
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* [[PWY-2161]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6614]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_8585]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_20412]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I: [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[GLYCOLYSIS-E-D]], superpathway of glycolysis and Entner-Doudoroff: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=22089}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12556 12556]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=20519}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02035 R02035]
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{{#set: centisome position=45.38698    }}
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* UNIPROT:
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{{#set: reaction associated=DIHYDROFOLATESYNTH-RXN|FOLYLPOLYGLUTAMATESYNTH-RXN|FORMYLTHFGLUSYNTH-RXN|RXN-6341|RXN0-2921}}
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** [http://www.uniprot.org/uniprot/P63337 P63337]
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{{#set: pathway associated=PWY-2161|PWY-6614}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=6-phosphogluconolactonase}}
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{{#set: ec number=EC-3.1.1.31}}
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{{#set: gene associated=Tiso_gene_10799|Tiso_gene_5901|Tiso_gene_15950|Tiso_gene_8585|Tiso_gene_20412}}
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{{#set: in pathway=P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:52, 21 March 2018

Gene Tiso_gene_92

  • right end position:
    • 22089
  • transcription direction:
    • POSITIVE
  • left end position:
    • 20519
  • centisome position:
    • 45.38698
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_92&oldid=44281"