Difference between revisions of "IDP"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** (3R)-3-hydroxybutanoy...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=IDP IDP] == * smiles: ** C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=IDP IDP] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)))
 
* common name:
 
* common name:
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
+
** IDP
−
** polyketide_synthase
+
* inchi key:
−
* ec number:
+
** InChIKey=JPXZQMKKFWMMGK-KQYNXXCUSA-K
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
* molecular weight:
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
** 425.165   
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** crotonoyl-[acyl-carrier-protein] hydratase
+
** riboxin
−
** β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
+
** inosine diphosphate
−
** β-hydroxybutyryl acyl carrier protein dehydrase
+
−
** enoyl acyl carrier protein hydrase
+
−
** crotonyl acyl carrier protein hydratase
+
−
** 3-hydroxybutyryl acyl carrier protein dehydratase
+
−
** β-hydroxybutyryl acyl carrier  protein dehydrase
+
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
+
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
+
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[ATIDm]]
−
** 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Crotonyl-ACPs]][c]
+
* [[RXN-14003]]
−
* With common name(s):
+
* [[ATID]]
−
** 1 a (3R)-3-hydroxybutanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a crotonyl-[acp][c]
+
== Reaction(s) known to produce the compound ==
−
 
+
* [[RXN0-5073]]
−
== Genes associated with this reaction  ==
+
* [[ITUP]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[ITCY]]
−
* [[Tiso_gene_6884]]
+
== Reaction(s) of unknown directionality ==
−
** EXPERIMENTAL_ANNOTATION
+
* [[RXN-14120]]
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* CAS : 86-04-4
−
** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
+
* BIGG : idp
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* PUBCHEM:
−
{{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}}
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7156952 7156952]
−
{{#set: common name=polyketide_synthase}}
+
* HMDB : HMDB03335
−
{{#set: ec number=EC-2.3.1.86}}
+
* LIGAND-CPD:
−
{{#set: ec number=EC-2.3.1.85}}
+
** [http://www.genome.jp/dbget-bin/www_bget?C00104 C00104]
−
{{#set: ec number=EC-4.2.1.59}}
+
* CHEMSPIDER:
−
{{#set: common name=crotonoyl-[acyl-carrier-protein] hydratase|β-hydroxybutyryl acyl carrier protein (ACP) dehydrase|β-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|crotonyl acyl carrier protein hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|β-hydroxybutyryl acyl carrier  protein dehydrase|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
+
** [http://www.chemspider.com/Chemical-Structure.3279691.html 3279691]
−
{{#set: gene associated=Tiso_gene_6884|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_500|Tiso_gene_135|Tiso_gene_10876}}
+
* CHEBI:
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY-7388}}
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58280 58280]
−
{{#set: reconstruction category=manual}}
+
* METABOLIGHTS : MTBLC58280
−
{{#set: reconstruction source=primary_network}}
+
{{#set: smiles=C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)))}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=IDP}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: inchi key=InChIKey=JPXZQMKKFWMMGK-KQYNXXCUSA-K}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: molecular weight=425.165    }}
 +
{{#set: common name=riboxin|inosine diphosphate}}
 +
{{#set: consumed by=ATIDm|RXN-14003|ATID}}
 +
{{#set: produced by=RXN0-5073|ITUP|ITCY}}
 +
{{#set: reversible reaction associated=RXN-14120}}

Latest revision as of 19:52, 21 March 2018

Metabolite IDP

  • smiles:
    • C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)))
  • common name:
    • IDP
  • inchi key:
    • InChIKey=JPXZQMKKFWMMGK-KQYNXXCUSA-K
  • molecular weight:
    • 425.165
  • Synonym(s):
    • riboxin
    • inosine diphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 86-04-4
  • BIGG : idp
  • PUBCHEM:
  • HMDB : HMDB03335
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC58280
"C(OP(=O)([O-])OP([O-])(=O)[O-])C1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC=NC=23)))" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=IDP&oldid=44286"