Difference between revisions of "RXNN-404"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** acyl-_...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] == * direction: ** LEFT-TO-RIGHT * common name: ** amidase * ec number: ** [http...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7904 RXN-7904] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXNN-404 RXNN-404] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** amidase
−
** acyl-_synthetase
+
−
** long_chain_acyl-_synthetase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
+
** [http://enzyme.expasy.org/EC/3.5.1.4 EC-3.5.1.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Long-Chain-Acyl-CoAs]][c]
+
** 1 [[CPD-237]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a long-chain fatty acid[c] '''+''' 1 ATP[c] '''+''' 1 coenzyme A[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 a long-chain acyl-CoA[c]
+
** 1 indole-3-acetamide[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13394]]
+
* Gene: [[Tiso_gene_13682]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_9394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7855]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_348]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4191]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5143]], long-chain fatty acid activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5143 PWY-5143]
+
* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6803]], phosphatidylcholine acyl editing: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6803 PWY-6803]
+
* [[PWY-5025]], indole-3-acetate biosynthesis IV (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5025 PWY-5025]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6873]], long chain fatty acid ester synthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6873 PWY-6873]
+
* [[PWY-3161]], indole-3-acetate biosynthesis III (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3161 PWY-3161]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7033]], alkane biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7033 PWY-7033]
+
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5885]], wax esters biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5885 PWY-5885]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* PIR:
+
* RHEA:
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A36275 A36275]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34371 34371]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54901 A54901]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A70117 A70117]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54901 B54901]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B75585 B75585]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C70762 C70762]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C71361 C71361]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C75364 C75364]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69649 D69649]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D72605 D72605]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86707 F86707]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81798 G81798]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64041 H64041]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H69274 H69274]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70173 H70173]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81068 H81068]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JE0262 JE0262]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0202 JX0202]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0205 JX0205]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23052 S23052]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S23467 S23467]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41589 S41589]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49487 S49487]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S56060 S56060]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74984 S74984]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T01875 T01875]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02834 T02834]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07928 T07928]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07929 T07929]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07944 T07944]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08182 T08182]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08904 T08904]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T34994 T34994]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35430 T35430]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T35513 T35513]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39766 T39766]
+
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00390 R00390]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03096 R03096]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/O60135 O60135]
+
−
** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
+
−
** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
+
−
** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
+
−
** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
+
−
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
+
−
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
+
−
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
+
−
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
+
−
** [http://www.uniprot.org/uniprot/O15840 O15840]
+
−
** [http://www.uniprot.org/uniprot/O81614 O81614]
+
−
** [http://www.uniprot.org/uniprot/P73004 P73004]
+
−
** [http://www.uniprot.org/uniprot/P47912 P47912]
+
−
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
+
−
** [http://www.uniprot.org/uniprot/P69452 P69452]
+
−
** [http://www.uniprot.org/uniprot/P69451 P69451]
+
−
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
+
−
** [http://www.uniprot.org/uniprot/P30624 P30624]
+
−
** [http://www.uniprot.org/uniprot/P33124 P33124]
+
−
** [http://www.uniprot.org/uniprot/P33121 P33121]
+
−
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
+
−
** [http://www.uniprot.org/uniprot/O51539 O51539]
+
−
** [http://www.uniprot.org/uniprot/O30039 O30039]
+
−
** [http://www.uniprot.org/uniprot/P44446 P44446]
+
−
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
+
−
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
+
−
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
+
−
** [http://www.uniprot.org/uniprot/P94547 P94547]
+
−
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
+
−
** [http://www.uniprot.org/uniprot/O83181 O83181]
+
−
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
+
−
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
+
−
** [http://www.uniprot.org/uniprot/P39002 P39002]
+
−
** [http://www.uniprot.org/uniprot/O51162 O51162]
+
−
** [http://www.uniprot.org/uniprot/P39518 P39518]
+
−
** [http://www.uniprot.org/uniprot/P18163 P18163]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=amidase}}
−
{{#set: common name=acyl-_synthetase}}
+
{{#set: ec number=EC-3.5.1.4}}
−
{{#set: common name=long_chain_acyl-_synthetase}}
+
{{#set: gene associated=Tiso_gene_13682}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=PWY-581|PWY-5025|PWY-3161}}
−
{{#set: ec number=EC-6.2.1.3}}
+
−
{{#set: gene associated=Tiso_gene_13394|Tiso_gene_9394|Tiso_gene_7855|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_348|Tiso_gene_4191|Tiso_gene_135}}
+
−
{{#set: in pathway=PWY-5143|PWY-6803|PWY-6873|PWY-7033|PWY-5885}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 19:54, 21 March 2018

Reaction RXNN-404

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • amidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-581, indole-3-acetate biosynthesis II: PWY-581
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-5025, indole-3-acetate biosynthesis IV (bacteria): PWY-5025
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3161, indole-3-acetate biosynthesis III (bacteria): PWY-3161
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXNN-404&oldid=44496"