Difference between revisions of "RNA-LIGASE-ATP-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8654 RXN-8654] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoate-protein_ligase_a ** l...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RNA-LIGASE-ATP-RXN RNA-LIGASE-ATP-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** gtp-bindi...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8654 RXN-8654] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RNA-LIGASE-ATP-RXN RNA-LIGASE-ATP-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** lipoate-protein_ligase_a
+
** gtp-binding_protein
−
** lipoate-protein_ligase
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.5.1.3 EC-6.5.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[LIPOIC-ACID]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[LIPOYL-AMP]][c] '''+''' 1 [[PPI]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[5-Phospho-RNA]][c] '''+''' 1 [[3Prime-OH-Terminated-RNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[RNAs]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (R)-lipoate[c] '''+''' 1 H+[c] '''+''' 1 ATP[c] '''=>''' 1 lipoyl-adenylate[c] '''+''' 1 diphosphate[c]
+
** 1 ATP[c] '''+''' 1 a 5'-phospho-ribonucleoside-[RNA][c] '''+''' 1 an [RNA]-3'-hydroxyl[c] '''=>''' 1 AMP[c] '''+''' 1 a ribonucleic acid[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_4493]]
+
* Gene: [[Tiso_gene_8398]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17215]]
+
* Gene: [[Tiso_gene_8397]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_8713]]
+
* Gene: [[Tiso_gene_8396]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_4494]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_17216]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-522]], lipoate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-522 PWY0-522]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6984]], lipoate salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6984 PWY-6984]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12913 12913]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07770 R07770]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07640 R07640]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P00971 P00971]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=lipoate-protein_ligase_a}}
+
{{#set: common name=gtp-binding_protein}}
−
{{#set: common name=lipoate-protein_ligase}}
+
{{#set: ec number=EC-6.5.1.3}}
−
{{#set: gene associated=Tiso_gene_4493|Tiso_gene_17215|Tiso_gene_8713|Tiso_gene_4494|Tiso_gene_17216}}
+
{{#set: gene associated=Tiso_gene_8398|Tiso_gene_8397|Tiso_gene_8396}}
−
{{#set: in pathway=PWY0-522|PWY-6984}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 19:55, 21 March 2018

Reaction RNA-LIGASE-ATP-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • gtp-binding_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a 5'-phospho-ribonucleoside-[RNA][c] + 1 an [RNA]-3'-hydroxyl[c] => 1 AMP[c] + 1 a ribonucleic acid[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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