Difference between revisions of "PWY-5022"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-CINNAMATE-4-MONOOXYGENASE-RXN TRANS-CINNAMATE-4-MONOOXYGENASE-RXN] == * direction: ** LEFT-TO...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANS-CINNAMATE-4-MONOOXYGENASE-RXN TRANS-CINNAMATE-4-MONOOXYGENASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
* ec number:
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* common name:
** [http://enzyme.expasy.org/EC/1.14.13.11 EC-1.14.13.11]
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** 4-aminobutanoate degradation V
 
* Synonym(s):
 
* Synonym(s):
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** GABA degradation
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''3''' reactions found over '''7''' reactions in the full pathway
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[CPD-674]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[COUMARATE]][c] '''+''' 1 [[NADP]][c]
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* [[4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN]]
* With common name(s):
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** 2 associated gene(s):
** 1 oxygen[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 trans-cinnamate[c] '''=>''' 1 H2O[c] '''+''' 1 4-coumarate[c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_777]]
 
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*** [[Tiso_gene_91]]
== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
* [[Tiso_gene_1547]]
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* [[GABATRANSAM-RXN]]
** [[pantograph]]-[[athaliana]]
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** 1 associated gene(s):
* [[Tiso_gene_8263]]
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*** [[Tiso_gene_11231]]
** [[pantograph]]-[[athaliana]]
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** 1 reconstruction source(s) associated:
== Pathways  ==
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*** [[orthology-synechocystis]]
* [[PWY1F-467]], phenylpropanoid biosynthesis, initial reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-467 PWY1F-467]
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* [[GLUTAMATE-DEHYDROGENASE-RXN]]
** '''1''' reactions found over '''2''' reactions in the full pathway
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** 1 associated gene(s):
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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*** [[Tiso_gene_2337]]
** '''9''' reactions found over '''19''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
* [[orthology]]:
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*** [[orthology-esiliculosus]]
** [[pantograph]]:
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== Reaction(s) not found ==
*** [[athaliana]]
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R11-RXN R11-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8889 RXN-8889]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8890 RXN-8890]
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: taxonomic range=TAX-1239}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10608 10608]
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{{#set: common name=4-aminobutanoate degradation V}}
* LIGAND-RXN:
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{{#set: common name=GABA degradation}}
** [http://www.genome.jp/dbget-bin/www_bget?R02253 R02253]
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{{#set: reaction found=3}}
* UNIPROT:
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{{#set: total reaction=7}}
** [http://www.uniprot.org/uniprot/Q04468 Q04468]
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{{#set: completion rate=43.0}}
** [http://www.uniprot.org/uniprot/P37115 P37115]
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** [http://www.uniprot.org/uniprot/Q9S8R8 Q9S8R8]
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** [http://www.uniprot.org/uniprot/P48522 P48522]
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** [http://www.uniprot.org/uniprot/Q42895 Q42895]
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** [http://www.uniprot.org/uniprot/O81928 O81928]
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** [http://www.uniprot.org/uniprot/O24315 O24315]
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** [http://www.uniprot.org/uniprot/Q43033 Q43033]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.14.13.11}}
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{{#set: gene associated=Tiso_gene_1547|Tiso_gene_8263}}
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{{#set: in pathway=PWY1F-467|PWY-1121}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana}}
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Latest revision as of 19:09, 21 March 2018

Pathway PWY-5022

  • taxonomic range:
  • common name:
    • 4-aminobutanoate degradation V
  • Synonym(s):
    • GABA degradation

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links