Difference between revisions of "Tiso gene 4171"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** diami...")
 
(Created page with "Category:Gene == Gene Tiso_gene_4171 == * right end position: ** 11971 * transcription direction: ** POSITIVE * left end position: ** 10170 * centisome position: ** 66.627...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
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== Gene Tiso_gene_4171 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 11971
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* common name:
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* transcription direction:
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** diaminopimelate_decarboxylase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
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** 10170
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* centisome position:
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** 66.62736   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN]]
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** 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LYS]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 meso-diaminopimelate[c] '''+''' 1 H+[c] '''=>''' 1 L-lysine[c] '''+''' 1 CO2[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-922]]
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* [[Tiso_gene_12041]]
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* [[PWY-7391]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_10737]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways ==
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=11971}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=10170}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
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{{#set: centisome position=66.62736    }}
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* UNIPROT:
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{{#set: reaction associated=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN}}
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** [http://www.uniprot.org/uniprot/P19572 P19572]
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{{#set: pathway associated=PWY-922|PWY-7391}}
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** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
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** [http://www.uniprot.org/uniprot/P44316 P44316]
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** [http://www.uniprot.org/uniprot/P56129 P56129]
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** [http://www.uniprot.org/uniprot/O67262 O67262]
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** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
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** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
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** [http://www.uniprot.org/uniprot/P00861 P00861]
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** [http://www.uniprot.org/uniprot/O27390 O27390]
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** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
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** [http://www.uniprot.org/uniprot/Q58497 Q58497]
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** [http://www.uniprot.org/uniprot/O29458 O29458]
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** [http://www.uniprot.org/uniprot/P41023 P41023]
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** [http://www.uniprot.org/uniprot/P23630 P23630]
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** [http://www.uniprot.org/uniprot/P09890 P09890]
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** [http://www.uniprot.org/uniprot/Q55484 Q55484]
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** [http://www.uniprot.org/uniprot/O05321 O05321]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=diaminopimelate_decarboxylase}}
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{{#set: ec number=EC-4.1.1.20}}
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{{#set: gene associated=Tiso_gene_12041|Tiso_gene_10737}}
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{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:56, 21 March 2018

Gene Tiso_gene_4171

  • right end position:
    • 11971
  • transcription direction:
    • POSITIVE
  • left end position:
    • 10170
  • centisome position:
    • 66.62736
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4171&oldid=44732"