Difference between revisions of "Tiso gene 8950"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13616 RXN-13616] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Gene == Gene Tiso_gene_8950 == * right end position: ** 941 * transcription direction: ** POSITIVE * left end position: ** 126 * centisome position: ** 1.2932363...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13616 RXN-13616] ==
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== Gene Tiso_gene_8950 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 941
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
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** POSITIVE
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* left end position:
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** 126
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* centisome position:
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** 1.2932363   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADEC]]
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** 1 [[WATER]][c] '''+''' 1 [[T2-DECENOYL-COA]][c] '''=>''' 1 [[CPD0-2244]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[ADENYLATECYC-RXN]]
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** 1 H2O[c] '''+''' 1 trans-dec-2-enoyl-CoA[c] '''=>''' 1 (S)-3-hydroxydecanoyl-CoA[c]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ATPASE-RXN]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_16145]]
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* Reaction: [[GUANYLCYC-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_14262]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* [[Tiso_gene_6885]]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** Assignment: ec-number
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* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
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* Reaction: [[RXN-12195]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* [[orthology]]:
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* Reaction: [[RXN-12196]]
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** [[pantograph]]:
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** Source: [[annotation-in-silico_annotation]]
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*** [[esiliculosus]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-5462]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=941}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31193 31193]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=126}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04744 R04744]
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{{#set: centisome position=1.2932363    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ADEC|ADENYLATECYC-RXN|ATPASE-RXN|GUANYLCYC-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: gene associated=Tiso_gene_16145|Tiso_gene_14262|Tiso_gene_6885}}
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{{#set: in pathway=PWY-7094}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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Latest revision as of 19:57, 21 March 2018

Gene Tiso_gene_8950

  • right end position:
    • 941
  • transcription direction:
    • POSITIVE
  • left end position:
    • 126
  • centisome position:
    • 1.2932363
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_8950&oldid=44900"