Difference between revisions of "Tiso gene 5838"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
(Created page with "Category:Gene == Gene Tiso_gene_5838 == * right end position: ** 3410 * transcription direction: ** POSITIVE * left end position: ** 1939 * centisome position: ** 15.06136...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLMURAMATEDEHYDROG-RXN UDPNACETYLMURAMATEDEHYDROG-RXN] ==
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== Gene Tiso_gene_5838 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3410
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** related_to_isoamyl_alcohol_oxidase
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* left end position:
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** d-lactate_dehydrogenase
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** 1939
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** xylitol_oxidase
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* centisome position:
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** mitochondrial_l-galactono-_-lactone_dehydrogenase
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** 15.061363   
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** oxidoreductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.1.98 EC-1.3.1.98]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[MERCAPYSTRANS-RXN]]
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** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP-ACETYL-CARBOXYVINYL-GLUCOSAMINE]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[UDP-N-ACETYLMURAMATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 UDP-N-acetyl-α-D-glucosamine-enolpyruvate[c] '''=>''' 1 NADP+[c] '''+''' 1 UDP-N-acetyl-α-D-muramate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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* Reaction: [[RXN0-6359]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_4659]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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* Reaction: [[RXN0-6385]]
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* [[Tiso_gene_7380]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[THIOSULFATE-SULFURTRANSFERASE-RXN]]
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* [[Tiso_gene_5195]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_2121]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[PWY-5329]]
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***EC-NUMBER
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* [[PWY-5350]]
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* [[Tiso_gene_14132]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12685]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12058]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6635]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5194]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2120]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6787]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2119]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_8778]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_210]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_7079]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18014]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14187]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4661]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6387 PWY-6387]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3410}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12248 12248]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1939}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03192 R03192]
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{{#set: centisome position=15.061363    }}
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* UNIPROT:
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{{#set: reaction associated=MERCAPYSTRANS-RXN|RXN0-6359|RXN0-6385|THIOSULFATE-SULFURTRANSFERASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q9PM01 Q9PM01]
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{{#set: pathway associated=PWY-5329|PWY-5350}}
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** [http://www.uniprot.org/uniprot/Q9JV28 Q9JV28]
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** [http://www.uniprot.org/uniprot/P44605 P44605]
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** [http://www.uniprot.org/uniprot/P08373 P08373]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=related_to_isoamyl_alcohol_oxidase}}
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{{#set: common name=d-lactate_dehydrogenase}}
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{{#set: common name=xylitol_oxidase}}
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{{#set: common name=mitochondrial_l-galactono-_-lactone_dehydrogenase}}
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{{#set: common name=oxidoreductase}}
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{{#set: ec number=EC-1.3.1.98}}
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{{#set: gene associated=Tiso_gene_4659|Tiso_gene_7380|Tiso_gene_5195|Tiso_gene_2121|Tiso_gene_14132|Tiso_gene_12685|Tiso_gene_12058|Tiso_gene_6635|Tiso_gene_5194|Tiso_gene_2120|Tiso_gene_6787|Tiso_gene_2119|Tiso_gene_8778|Tiso_gene_210|Tiso_gene_7079|Tiso_gene_18014|Tiso_gene_14187|Tiso_gene_4661}}
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{{#set: in pathway=PWY-6386|PWY-6387}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:02, 21 March 2018

Gene Tiso_gene_5838

  • right end position:
    • 3410
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1939
  • centisome position:
    • 15.061363
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5838&oldid=45405"