Difference between revisions of "GLYOHMETRANS-RXN"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_775 == * Synonym(s): == Reactions associated == * PROTEIN-KINASE-RXN ** pantograph-esiliculosus == Pathways associated == == E...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == * direction: ** REVERSIBLE * common name: ** serine_hydroxyme...") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == |
+ | * direction: | ||
+ | ** REVERSIBLE | ||
+ | * common name: | ||
+ | ** serine_hydroxymethyltransferase | ||
+ | ** serine_cytosolic-like_isoform_1 | ||
+ | ** serine_hydroxymethyltransferase_mitochondrial | ||
+ | ** ORF | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.1.2.1 EC-2.1.2.1] | ||
* Synonym(s): | * Synonym(s): | ||
− | == | + | == Reaction Formula == |
− | * [[ | + | * With identifiers: |
− | ** [[ | + | ** 1 [[THF-GLU-N]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLY]][c] |
− | == Pathways | + | * With common name(s): |
+ | ** 1 a tetrahydrofolate[c] '''+''' 1 L-serine[c] '''<=>''' 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 H2O[c] '''+''' 1 glycine[c] | ||
+ | |||
+ | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[Tiso_gene_16153]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_7776]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_18652]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | * Gene: [[Tiso_gene_16154]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | == Pathways == | ||
+ | * [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] | ||
+ | ** '''5''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841] | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661] | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[GLYSYN-PWY]], glycine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-PWY GLYSYN-PWY] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497] | ||
+ | ** '''7''' reactions found over '''24''' reactions in the full pathway | ||
+ | * [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201] | ||
+ | ** '''7''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[manual]] | ||
+ | ** Source: [[manual-primary_network]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | {{#set: | + | * RHEA: |
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P35623 P35623] | ||
+ | ** [http://www.uniprot.org/uniprot/P34898 P34898] | ||
+ | ** [http://www.uniprot.org/uniprot/P34899 P34899] | ||
+ | ** [http://www.uniprot.org/uniprot/P34896 P34896] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7] | ||
+ | ** [http://www.uniprot.org/uniprot/P34897 P34897] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1] | ||
+ | ** [http://www.uniprot.org/uniprot/O23254 O23254] | ||
+ | ** [http://www.uniprot.org/uniprot/O53441 O53441] | ||
+ | ** [http://www.uniprot.org/uniprot/O08370 O08370] | ||
+ | ** [http://www.uniprot.org/uniprot/P43844 P43844] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58992 Q58992] | ||
+ | ** [http://www.uniprot.org/uniprot/O66776 O66776] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7] | ||
+ | ** [http://www.uniprot.org/uniprot/P47634 P47634] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9] | ||
+ | ** [http://www.uniprot.org/uniprot/P56089 P56089] | ||
+ | ** [http://www.uniprot.org/uniprot/O53615 O53615] | ||
+ | ** [http://www.uniprot.org/uniprot/O83349 O83349] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7] | ||
+ | ** [http://www.uniprot.org/uniprot/O51547 O51547] | ||
+ | ** [http://www.uniprot.org/uniprot/O84439 O84439] | ||
+ | ** [http://www.uniprot.org/uniprot/P24531 P24531] | ||
+ | ** [http://www.uniprot.org/uniprot/P39148 P39148] | ||
+ | ** [http://www.uniprot.org/uniprot/P24060 P24060] | ||
+ | ** [http://www.uniprot.org/uniprot/P37292 P37292] | ||
+ | ** [http://www.uniprot.org/uniprot/P34895 P34895] | ||
+ | ** [http://www.uniprot.org/uniprot/P34894 P34894] | ||
+ | ** [http://www.uniprot.org/uniprot/P49357 P49357] | ||
+ | ** [http://www.uniprot.org/uniprot/P49358 P49358] | ||
+ | ** [http://www.uniprot.org/uniprot/P50433 P50433] | ||
+ | ** [http://www.uniprot.org/uniprot/P37291 P37291] | ||
+ | ** [http://www.uniprot.org/uniprot/P78011 P78011] | ||
+ | ** [http://www.uniprot.org/uniprot/P77962 P77962] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5] | ||
+ | ** [http://www.uniprot.org/uniprot/O23984 O23984] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A825 P0A825] | ||
+ | ** [http://www.uniprot.org/uniprot/P07511 P07511] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: common name=serine_hydroxymethyltransferase}} | ||
+ | {{#set: common name=serine_cytosolic-like_isoform_1}} | ||
+ | {{#set: common name=serine_hydroxymethyltransferase_mitochondrial}} | ||
+ | {{#set: common name=ORF}} | ||
+ | {{#set: ec number=EC-2.1.2.1}} | ||
+ | {{#set: gene associated=Tiso_gene_16153|Tiso_gene_7776|Tiso_gene_18652|Tiso_gene_16154}} | ||
+ | {{#set: in pathway=PWY-2161|PWY-1622|PWY-3841|1CMET2-PWY|PWY-3661|GLYSYN-PWY|PWY-5497|PWY-2201|PWY-181|PWY-3661-1}} | ||
+ | {{#set: reconstruction category=orthology|manual|annotation}} | ||
+ | {{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 20:02, 21 March 2018
Contents
Reaction GLYOHMETRANS-RXN
- direction:
- REVERSIBLE
- common name:
- serine_hydroxymethyltransferase
- serine_cytosolic-like_isoform_1
- serine_hydroxymethyltransferase_mitochondrial
- ORF
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 THF-GLU-N[c] + 1 SER[c] <=> 1 METHYLENE-THF-GLU-N[c] + 1 WATER[c] + 1 GLY[c]
- With common name(s):
- 1 a tetrahydrofolate[c] + 1 L-serine[c] <=> 1 a 5,10-methylene-tetrahydrofolate[c] + 1 H2O[c] + 1 glycine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_16153
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_7776
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_18652
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_16154
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PWY-2161, folate polyglutamylation: PWY-2161
- 5 reactions found over 5 reactions in the full pathway
- PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
- 5 reactions found over 13 reactions in the full pathway
- PWY-3841, folate transformations II: PWY-3841
- 9 reactions found over 11 reactions in the full pathway
- 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
- 7 reactions found over 9 reactions in the full pathway
- PWY-3661, glycine betaine degradation I: PWY-3661
- 4 reactions found over 7 reactions in the full pathway
- GLYSYN-PWY, glycine biosynthesis I: GLYSYN-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
- 7 reactions found over 24 reactions in the full pathway
- PWY-2201, folate transformations I: PWY-2201
- 7 reactions found over 12 reactions in the full pathway
- PWY-181, photorespiration: PWY-181
- 5 reactions found over 9 reactions in the full pathway
- PWY-3661-1, glycine betaine degradation II (mammalian): PWY-3661-1
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: