Difference between revisions of "RXN-13697"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13697 RXN-13697] == * direction: ** REVERSIBLE * common name: ** aspartate_aminotransferase **...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13697 RXN-13697] == * direction: ** REVERSIBLE * common name: ** aspartate_aminotransferase **...") |
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== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[Tiso_gene_13538]] |
| − | ** | + | ** Source: [[orthology-esiliculosus]] |
| − | + | * Gene: [[Tiso_gene_12889]] | |
| − | + | ** Source: [[annotation-in-silico_annotation]] | |
| − | * [[Tiso_gene_12889]] | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | ** | + | * Gene: [[Tiso_gene_6815]] |
| − | ***AUTOMATED-NAME-MATCH | + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[ | + | *** Assignment: EC-NUMBER |
| − | ** [[ | + | ** Source: [[annotation-experimental_annotation]] |
| − | + | *** Assignment: EC-NUMBER | |
| − | + | * Gene: [[Tiso_gene_17718]] | |
| − | ***EC-NUMBER | + | ** Source: [[annotation-experimental_annotation]] |
| − | ** | + | *** Assignment: EC-NUMBER |
| − | ***EC-NUMBER | + | ** Source: [[orthology-esiliculosus]] |
| − | * [[ | + | * Gene: [[Tiso_gene_17809]] |
| − | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[Tiso_gene_17809]] | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | ** | + | * Gene: [[Tiso_gene_15680]] |
| − | ***AUTOMATED-NAME-MATCH | + | ** Source: [[orthology-esiliculosus]] |
== Pathways == | == Pathways == | ||
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] | * [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] | ||
| Line 43: | Line 43: | ||
** '''7''' reactions found over '''9''' reactions in the full pathway | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]] | + | * Category: [[orthology]] |
| − | ** [[ | + | ** Source: [[orthology-esiliculosus]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| − | * [[annotation]]: | + | * Category: [[annotation]] |
| − | ** [[pathwaytools]] | + | ** Source: [[annotation-in-silico_annotation]] |
| − | ** | + | *** Tool: [[pathwaytools]] |
| − | *** [[ | + | ** Source: [[annotation-experimental_annotation]] |
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
| Line 55: | Line 56: | ||
{{#set: common name=aminotransferase}} | {{#set: common name=aminotransferase}} | ||
{{#set: ec number=EC-2.6.1.1}} | {{#set: ec number=EC-2.6.1.1}} | ||
| − | {{#set: gene associated= | + | {{#set: gene associated=Tiso_gene_13538|Tiso_gene_12889|Tiso_gene_6815|Tiso_gene_17718|Tiso_gene_17809|Tiso_gene_15680}} |
{{#set: in pathway=PWY-7117|PWY-7115}} | {{#set: in pathway=PWY-7117|PWY-7115}} | ||
| − | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=orthology|annotation}} |
| − | + | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}} | |
| − | {{#set: reconstruction source=esiliculosus | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
| − | + | ||
| − | {{#set: reconstruction tool=pathwaytools | + | |
| − | + | ||
Latest revision as of 20:02, 21 March 2018
Contents
Reaction RXN-13697
- direction:
- REVERSIBLE
- common name:
- aspartate_aminotransferase
- aminotransferase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 L-ASPARTATE[c] + 1 2-KETOGLUTARATE[c] <=> 1 GLT[c] + 1 OXALACETIC_ACID[c]
- With common name(s):
- 1 L-aspartate[c] + 1 2-oxoglutarate[c] <=> 1 L-glutamate[c] + 1 oxaloacetate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_13538
- Source: orthology-esiliculosus
- Gene: Tiso_gene_12889
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6815
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_17718
- Source: annotation-experimental_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-experimental_annotation
- Gene: Tiso_gene_17809
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_15680
- Source: orthology-esiliculosus
Pathways
- PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
- 7 reactions found over 10 reactions in the full pathway
- PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
