Difference between revisions of "Tiso gene 2224"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15556 RXN-15556] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_e3_ubiquitin-prote...")
 
(Created page with "Category:Gene == Gene Tiso_gene_2224 == * right end position: ** 3659 * transcription direction: ** NEGATIVE * left end position: ** 1789 * centisome position: ** 8.914246...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15556 RXN-15556] ==
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== Gene Tiso_gene_2224 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3659
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* common name:
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* transcription direction:
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** probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10
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** NEGATIVE
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** ORF
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* left end position:
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** ubiquitin_protein_ligase
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** 1789
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** peptidyl-prolyl_cis-trans_isomerase-like_2
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* centisome position:
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** e3_ubiquitin_ligase
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** 8.914246   
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** zinc_finger_protein
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−
** ubiquitin-conjugating_enzyme_e2
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−
** o_ubiquitin_protein_ligase_e3a
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−
** stackhouse_genomicscaffold_453
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−
** f-box_only_protein_11
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−
** ubiquitin-conjugating_enzymee2
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−
** ubiquitin-protein_ligase
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** low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like
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** hect_e3_ubiquitin_ligase
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−
** secretion-regulating_guanine_nucleotide_exchange
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−
** ubiquitinconjugating_enzyme_e2
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−
** auxin_transport_protein_isoform_2
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−
** zinc_n-recogninwd40-like
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−
** ubiquitin-
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−
** f-box_lrr-repeat_protein_2
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−
** brca1-associated_ring_domain_protein_1
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−
** os06g0159400_protein
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−
** ankyrin_repeatdomain-containingprotein-50partial
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−
** phosphoglycerate_mutase_family_protein
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−
** tnf_receptor-associated_factor
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−
** wd_sam_and_u-box_domain_containing_1
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−
** anaphase_promoting_complex_subunit_11
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−
** hrd1-like_protein
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−
** e3_isg15--protein_ligase_herc6
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−
** rni-like_protein
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−
** f-box_lrr-repeat_protein
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−
** regulator_of_chromosome_condensation_rcc1
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−
** probable_e3_ubiquitin-protein_ligase_herc4
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−
** rab_family_gtpase
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−
* ec number:
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−
** [http://enzyme.expasy.org/EC/2.3.2.23 EC-2.3.2.23]
+
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
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** 1 [[Ubiquitin-carrier-protein-E2-L-cysteine]][c] '''+''' 1 [[S-ubiquitinyl-UAP-E1-L-cysteine]][c] '''=>''' 1 [[S-ubiquitinyl-UCP-E2-L-cysteine]][c] '''+''' 1 [[Ubiquitin-activating-protein-E1-L-cys]][c]
+
** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
−
** 1 an [E2 ubiquitin-conjugating enzyme]-L-cysteine[c] '''+''' 1 an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine[c] '''=>''' 1 an S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine[c] '''+''' 1 an [E1 ubiquitin-activating enzyme]-L-cysteine[c]
+
** Source: [[annotation-experimental_annotation]]
−
 
+
*** Assignment: ec-number
−
== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
−
Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[HICH]]
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* [[Tiso_gene_11148]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-13721]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_1591]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
−
* [[Tiso_gene_1586]]
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* Reaction: [[RXN-6384]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
−
* [[Tiso_gene_1592]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_558]]
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* [[PWY-7574]]
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** IN-SILICO_ANNOTATION
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* [[VALDEG-PWY]]
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***EC-NUMBER
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* [[PWY-3941]]
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* [[Tiso_gene_2226]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
* [[Tiso_gene_3211]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_9662]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4460]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
* [[Tiso_gene_12619]]
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−
** EXPERIMENTAL_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
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−
* [[Tiso_gene_612]]
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−
** IN-SILICO_ANNOTATION
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−
***AUTOMATED-NAME-MATCH
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18752]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_1593]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_1253]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_14182]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8048]]
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−
** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
+
−
* [[Tiso_gene_14181]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4966]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1589]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6901]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15885]]
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−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_5776]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10888]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2815]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3419]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1427]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7308]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15884]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_8637]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4484]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6910]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12029]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7955]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14567]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4585]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14650]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16642]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15624]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1588]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5502]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1583]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1426]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15097]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17194]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16913]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1582]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4094]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15214]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1585]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19647]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_20066]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15467]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_12309]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17363]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1584]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17004]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9666]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17112]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17195]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6902]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3210]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8483]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2802]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14451]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_12298]]
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−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1587]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17517]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9575]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11823]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3080]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17196]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7719]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17030]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18824]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1590]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2932]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8801]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16166]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3418]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3081]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6903]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_557]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8636]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17423]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14452]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9520]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_12348]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7506]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10782]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6946]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13619]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4461]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14360]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5622]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways ==
+
−
* [[PWY-7511]], protein ubiquitylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=3659}}
−
{{#set: common name=probable_e3_ubiquitin-protein_ligase_herc4_isoform_x10}}
+
{{#set: transcription direction=NEGATIVE}}
−
{{#set: common name=ORF}}
+
{{#set: left end position=1789}}
−
{{#set: common name=ubiquitin_protein_ligase}}
+
{{#set: centisome position=8.914246    }}
−
{{#set: common name=peptidyl-prolyl_cis-trans_isomerase-like_2}}
+
{{#set: reaction associated=3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN|HICH|RXN-13721|RXN-6384}}
−
{{#set: common name=e3_ubiquitin_ligase}}
+
{{#set: pathway associated=PWY-7574|VALDEG-PWY|PWY-3941}}
−
{{#set: common name=zinc_finger_protein}}
+
−
{{#set: common name=ubiquitin-conjugating_enzyme_e2}}
+
−
{{#set: common name=o_ubiquitin_protein_ligase_e3a}}
+
−
{{#set: common name=stackhouse_genomicscaffold_453}}
+
−
{{#set: common name=f-box_only_protein_11}}
+
−
{{#set: common name=ubiquitin-conjugating_enzymee2}}
+
−
{{#set: common name=ubiquitin-protein_ligase}}
+
−
{{#set: common name=low_quality_protein:_e3_ubiquitin-protein_ligase_herc2-like}}
+
−
{{#set: common name=hect_e3_ubiquitin_ligase}}
+
−
{{#set: common name=secretion-regulating_guanine_nucleotide_exchange}}
+
−
{{#set: common name=ubiquitinconjugating_enzyme_e2}}
+
−
{{#set: common name=auxin_transport_protein_isoform_2}}
+
−
{{#set: common name=zinc_n-recogninwd40-like}}
+
−
{{#set: common name=ubiquitin-}}
+
−
{{#set: common name=f-box_lrr-repeat_protein_2}}
+
−
{{#set: common name=brca1-associated_ring_domain_protein_1}}
+
−
{{#set: common name=os06g0159400_protein}}
+
−
{{#set: common name=ankyrin_repeatdomain-containingprotein-50partial}}
+
−
{{#set: common name=phosphoglycerate_mutase_family_protein}}
+
−
{{#set: common name=tnf_receptor-associated_factor}}
+
−
{{#set: common name=wd_sam_and_u-box_domain_containing_1}}
+
−
{{#set: common name=anaphase_promoting_complex_subunit_11}}
+
−
{{#set: common name=hrd1-like_protein}}
+
−
{{#set: common name=e3_isg15--protein_ligase_herc6}}
+
−
{{#set: common name=rni-like_protein}}
+
−
{{#set: common name=f-box_lrr-repeat_protein}}
+
−
{{#set: common name=regulator_of_chromosome_condensation_rcc1}}
+
−
{{#set: common name=probable_e3_ubiquitin-protein_ligase_herc4}}
+
−
{{#set: common name=rab_family_gtpase}}
+
−
{{#set: ec number=EC-2.3.2.23}}
+
−
{{#set: gene associated=Tiso_gene_11148|Tiso_gene_1591|Tiso_gene_1586|Tiso_gene_1592|Tiso_gene_558|Tiso_gene_2226|Tiso_gene_3211|Tiso_gene_9662|Tiso_gene_4460|Tiso_gene_12619|Tiso_gene_612|Tiso_gene_18752|Tiso_gene_1593|Tiso_gene_1253|Tiso_gene_14182|Tiso_gene_8048|Tiso_gene_14181|Tiso_gene_4966|Tiso_gene_1589|Tiso_gene_6901|Tiso_gene_15885|Tiso_gene_5776|Tiso_gene_10888|Tiso_gene_2815|Tiso_gene_3419|Tiso_gene_1427|Tiso_gene_7308|Tiso_gene_15884|Tiso_gene_8637|Tiso_gene_4484|Tiso_gene_6910|Tiso_gene_12029|Tiso_gene_7955|Tiso_gene_14567|Tiso_gene_4585|Tiso_gene_14650|Tiso_gene_16642|Tiso_gene_15624|Tiso_gene_1588|Tiso_gene_5502|Tiso_gene_1583|Tiso_gene_1426|Tiso_gene_15097|Tiso_gene_17194|Tiso_gene_16913|Tiso_gene_1582|Tiso_gene_4094|Tiso_gene_15214|Tiso_gene_1585|Tiso_gene_19647|Tiso_gene_20066|Tiso_gene_15467|Tiso_gene_12309|Tiso_gene_17363|Tiso_gene_1584|Tiso_gene_17004|Tiso_gene_9666|Tiso_gene_17112|Tiso_gene_17195|Tiso_gene_6902|Tiso_gene_3210|Tiso_gene_8483|Tiso_gene_2802|Tiso_gene_14451|Tiso_gene_12298|Tiso_gene_1587|Tiso_gene_17517|Tiso_gene_9575|Tiso_gene_11823|Tiso_gene_3080|Tiso_gene_17196|Tiso_gene_7719|Tiso_gene_17030|Tiso_gene_18824|Tiso_gene_1590|Tiso_gene_2932|Tiso_gene_8801|Tiso_gene_16166|Tiso_gene_3418|Tiso_gene_3081|Tiso_gene_6903|Tiso_gene_557|Tiso_gene_8636|Tiso_gene_17423|Tiso_gene_14452|Tiso_gene_9520|Tiso_gene_12348|Tiso_gene_7506|Tiso_gene_10782|Tiso_gene_6946|Tiso_gene_13619|Tiso_gene_4461|Tiso_gene_14360|Tiso_gene_5622}}
+
−
{{#set: in pathway=PWY-7511}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 21:03, 21 March 2018

Gene Tiso_gene_2224

  • right end position:
    • 3659
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1789
  • centisome position:
    • 8.914246
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2224&oldid=45527"