Difference between revisions of "Tiso gene 2159"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7913 RXN-7913] == * direction: ** LEFT-TO-RIGHT * common name: ** cytidylate_kinase ** ump-cmp_...")
 
(Created page with "Category:Gene == Gene Tiso_gene_2159 == * right end position: ** 15716 * transcription direction: ** POSITIVE * left end position: ** 13819 * centisome position: ** 67.707...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7913 RXN-7913] ==
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== Gene Tiso_gene_2159 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 15716
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* common name:
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* transcription direction:
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** cytidylate_kinase
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** POSITIVE
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** ump-cmp_kinase
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* left end position:
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* ec number:
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** 13819
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** [http://enzyme.expasy.org/EC/2.7.4.25 EC-2.7.4.25]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
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** 67.70701   
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** [http://enzyme.expasy.org/EC/2.7.4.13 EC-2.7.4.13]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PYRIMSYN3-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[DCMP]][c] '''=>''' 1 [[DCDP]][c] '''+''' 1 [[ADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 dCMP[c] '''=>''' 1 dCDP[c] '''+''' 1 ADP[c]
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* Reaction: [[RXN-12610]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12611]]
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* [[Tiso_gene_2386]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[THI-P-SYN-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_9739]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[PWY-6907]]
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***EC-NUMBER
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* [[PWY-6890]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-7356]]
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***EC-NUMBER
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* [[PWY-7357]]
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* [[Tiso_gene_14116]]
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* [[PWY-6894]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-6897]]
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* [[Tiso_gene_19734]]
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* [[PWY-7282]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6908]]
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***EC-NUMBER
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* [[PWY-6893]]
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** [[pantograph]]-[[athaliana]]
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* [[PWY-6910]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=15716}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25094 25094]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=13819}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01665 R01665]
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{{#set: centisome position=67.70701    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=PYRIMSYN3-RXN|RXN-12610|RXN-12611|THI-P-SYN-RXN}}
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{{#set: common name=cytidylate_kinase}}
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{{#set: pathway associated=PWY-6907|PWY-6890|PWY-7356|PWY-7357|PWY-6894|PWY-6897|PWY-7282|PWY-6908|PWY-6893|PWY-6910}}
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{{#set: common name=ump-cmp_kinase}}
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{{#set: ec number=EC-2.7.4.25}}
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{{#set: ec number=EC-2.7.4.14}}
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{{#set: ec number=EC-2.7.4.13}}
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{{#set: gene associated=Tiso_gene_2386|Tiso_gene_9739|Tiso_gene_14116|Tiso_gene_19734}}
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{{#set: in pathway=PWY-7197}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:04, 21 March 2018

Gene Tiso_gene_2159

  • right end position:
    • 15716
  • transcription direction:
    • POSITIVE
  • left end position:
    • 13819
  • centisome position:
    • 67.70701
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2159&oldid=45647"