Difference between revisions of "RXN-12171"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] == * direction:...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12171 RXN-12171] == * direction: ** REVERSIBLE * common name: ** thymidine_phosphorylase * ec n...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12171 RXN-12171] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** glutarate-semialdehyde_dehydrogenase
+
** thymidine_phosphorylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.24 EC-1.2.1.24]
+
** [http://enzyme.expasy.org/EC/2.4.1.1 EC-2.4.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[SUCC-S-ALD]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[SUC]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[Pi]][c] '''+''' 1 [[Maltodextrins]][c] '''<=>''' 1 [[GLC-1-P]][c] '''+''' 1 [[Maltodextrins]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 succinate semialdehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 succinate[c] '''+''' 2 H+[c] '''+''' 1 NADH[c]
+
** 1 phosphate[c] '''+''' 1 a maltodextrin[c] '''<=>''' 1 &alpha;-D-glucopyranose 1-phosphate[c] '''+''' 1 a maltodextrin[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6952]]
+
* Gene: [[Tiso_gene_1011]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
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*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_91]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_777]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6473]], 4-aminobutanoate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6473 PWY-6473]
+
* [[PWY-6731]], starch degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6731 PWY-6731]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
+
* [[PWY-6737]], starch degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6737 PWY-6737]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
+
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13217 13217]
+
{{#set: common name=thymidine_phosphorylase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-2.4.1.1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00713 R00713]
+
{{#set: gene associated=Tiso_gene_1011}}
−
* UNIPROT:
+
{{#set: in pathway=PWY-6731|PWY-6737}}
−
** [http://www.uniprot.org/uniprot/P51649 P51649]
+
−
** [http://www.uniprot.org/uniprot/P51650 P51650]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glutarate-semialdehyde_dehydrogenase}}
+
−
{{#set: ec number=EC-1.2.1.24}}
+
−
{{#set: gene associated=Tiso_gene_6952|Tiso_gene_91|Tiso_gene_777}}
+
−
{{#set: in pathway=PWY-6473|PWY-6535|GLUDEG-I-PWY|PWY-4321}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:07, 21 March 2018

Reaction RXN-12171

  • direction:
    • REVERSIBLE
  • common name:
    • thymidine_phosphorylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 phosphate[c] + 1 a maltodextrin[c] <=> 1 α-D-glucopyranose 1-phosphate[c] + 1 a maltodextrin[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6731, starch degradation III: PWY-6731
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6737, starch degradation V: PWY-6737
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12171&oldid=46038"