Difference between revisions of "RXN-12002"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_10282 == * left end position: ** 3609 * transcription direction: ** POSITIVE * right end position: ** 8609 * centisome position: ** 41.6359...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] == * direction: ** LEFT-TO-RIGHT * common name: ** ump-cmp_kinase ** cytidylat...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_10282 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] ==
−
* left end position:
+
* direction:
−
** 3609
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** ump-cmp_kinase
−
* right end position:
+
** cytidylate_kinase
−
** 8609
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/2.7.4.22 EC-2.7.4.22]
−
** 41.635902   
+
** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ATPASE-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[ATP]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[ADP]][c]
−
***ec-number
+
* With common name(s):
−
** experimental_annotation
+
** 1 ATP[c] '''+''' 1 UMP[c] '''=>''' 1 UDP[c] '''+''' 1 ADP[c]
−
***ec-number
+
 
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
== Genes associated with this reaction  ==
−
** in-silico_annotation
+
Genes have been associated with this reaction based on different elements listed below.
−
***ec-number
+
* Gene: [[Tiso_gene_17057]]
−
** experimental_annotation
+
** Source: [[orthology-esiliculosus]]
−
***ec-number
+
* Gene: [[Tiso_gene_14116]]
−
* [[RXN-12195]]
+
** Source: [[orthology-esiliculosus]]
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_2386]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
** experimental_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
** Source: [[annotation-experimental_annotation]]
−
* [[RXN-12196]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_9739]]
−
***ec-number
+
** Source: [[annotation-in-silico_annotation]]
−
** experimental_annotation
+
*** Assignment: EC-NUMBER
−
***ec-number
+
** Source: [[annotation-experimental_annotation]]
−
* [[RXN0-5462]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
** Source: [[orthology-creinhardtii]]
−
***ec-number
+
* Gene: [[Tiso_gene_19734]]
−
** experimental_annotation
+
** Source: [[annotation-in-silico_annotation]]
−
***ec-number
+
*** Assignment: EC-NUMBER
−
== Pathways associated ==
+
** Source: [[orthology-athaliana]]
−
* [[PWY-7210]]
+
** Source: [[orthology-esiliculosus]]
−
* [[PWY-7198]]
+
** Source: [[orthology-creinhardtii]]
−
* [[PWY-6545]]
+
== Pathways  ==
−
* [[PWY-7184]]
+
* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3609}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24400 24400]
−
{{#set: right end position=8609}}
+
* LIGAND-RXN:
−
{{#set: centisome position=41.635902    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00158 R00158]
−
{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY-7210|PWY-7198|PWY-6545|PWY-7184}}
+
{{#set: common name=ump-cmp_kinase}}
 +
{{#set: common name=cytidylate_kinase}}
 +
{{#set: ec number=EC-2.7.4.22}}
 +
{{#set: ec number=EC-2.7.4.14}}
 +
{{#set: gene associated=Tiso_gene_17057|Tiso_gene_14116|Tiso_gene_2386|Tiso_gene_9739|Tiso_gene_19734}}
 +
{{#set: in pathway=PWY-7176}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:07, 21 March 2018

Reaction RXN-12002

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ump-cmp_kinase
    • cytidylate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 UMP[c] => 1 UDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7176, UTP and CTP de novo biosynthesis: PWY-7176
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12002&oldid=46050"