Difference between revisions of "Tiso gene 6458"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11486 RXN-11486] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Gene == Gene Tiso_gene_6458 == * right end position: ** 6768 * transcription direction: ** POSITIVE * left end position: ** 1597 * centisome position: ** 13.08587...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11486 RXN-11486] ==
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== Gene Tiso_gene_6458 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6768
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.5.1.85 EC-2.5.1.85]
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** POSITIVE
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* left end position:
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** 1597
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* centisome position:
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** 13.085874   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.7.7.11-RXN]]
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** 5 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] '''=>''' 5 [[PPI]][c] '''+''' 1 [[SOLANESYL-PYROPHOSPHATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 5 isopentenyl diphosphate[c] '''+''' 1 geranylgeranyl diphosphate[c] '''=>''' 5 diphosphate[c] '''+''' 1 all-trans-nonaprenyl diphosphate[c]
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* Reaction: [[2.7.7.44-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[GLUC1PURIDYLTRANS-RXN]]
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* [[Tiso_gene_2848]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[NAG1P-URIDYLTRANS-RXN]]
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* [[Tiso_gene_18201]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[UTPHEXPURIDYLYLTRANS-RXN]]
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* [[PWY-6520]], nonaprenyl diphosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6520 PWY-6520]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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== Pathways associated ==
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* [[orthology]]:
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* [[UDPNACETYLGALSYN-PWY]]
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** [[pantograph]]:
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* [[PWY-7238]]
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*** [[synechocystis]]
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* [[PWY0-1261]]
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*** [[esiliculosus]]
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* [[UDPNAGSYN-PWY]]
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* [[PWY-7343]]
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* [[PWY-3801]]
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* [[PWY-3821]]
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* [[PWY-7817]]
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* [[PWY-5514]]
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* [[PWY-6527]]
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* [[PWY-4841]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6768}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27594 27594]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1597}}
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** [http://www.genome.jp/dbget-bin/www_bget?R09251 R09251]
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{{#set: centisome position=13.085874    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=2.7.7.11-RXN|2.7.7.44-RXN|GLUC1PURIDYLTRANS-RXN|NAG1P-URIDYLTRANS-RXN|UTPHEXPURIDYLYLTRANS-RXN}}
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{{#set: ec number=EC-2.5.1.85}}
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{{#set: pathway associated=UDPNACETYLGALSYN-PWY|PWY-7238|PWY0-1261|UDPNAGSYN-PWY|PWY-7343|PWY-3801|PWY-3821|PWY-7817|PWY-5514|PWY-6527|PWY-4841}}
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{{#set: gene associated=Tiso_gene_2848|Tiso_gene_18201}}
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{{#set: in pathway=PWY-6520}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus}}
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Latest revision as of 20:07, 21 March 2018

Gene Tiso_gene_6458

  • right end position:
    • 6768
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1597
  • centisome position:
    • 13.085874
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6458&oldid=46054"