Difference between revisions of "ALANINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_4284 == * left end position: ** 53 * transcription direction: ** NEGATIVE * right end position: ** 2586 * centisome position: ** 0.3513657...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_4284 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALANINE--TRNA-LIGASE-RXN ALANINE--TRNA-LIGASE-RXN] ==
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* left end position:
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* direction:
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** 53
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** threonine_alanine_trna_ligase_subfamily_protein
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* right end position:
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** ORF
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** 2586
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** alanyl-trna_synthetase
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* centisome position:
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* ec number:
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** 0.3513657   
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** [http://enzyme.expasy.org/EC/6.1.1.7 EC-6.1.1.7]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-12587]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 L-alanine[c] '''+''' 1 a tRNAala[c] '''+''' 1 ATP[c] '''+''' 1 H+[c] '''=>''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-alanyl-[tRNAala][c]
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***ec-number
+
 
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** [[pantograph]]-[[esiliculosus]]
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== Genes associated with this reaction  ==
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* [[RXN-12588]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_2298]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_3249]]
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* [[RXN-14382]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_18607]]
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* [[RXN-14384]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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* Gene: [[Tiso_gene_18609]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-14385]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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* Gene: [[Tiso_gene_19573]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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** experimental_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[RXN-14386]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** in-silico_annotation
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** '''21''' reactions found over '''21''' reactions in the full pathway
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***ec-number
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== Reconstruction information  ==
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** experimental_annotation
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* Category: [[orthology]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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*** Tool: [[pantograph]]
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* [[RXN-15881]]
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* Category: [[annotation]]
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** in-silico_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
−
***ec-number
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*** Tool: [[pathwaytools]]
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** [[pantograph]]-[[esiliculosus]]
+
−
* [[RXN-9787]]
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−
** in-silico_annotation
+
−
***ec-number
+
−
** experimental_annotation
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−
***ec-number
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[RXN0-308]]
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−
** in-silico_annotation
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−
***ec-number
+
−
** experimental_annotation
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−
***ec-number
+
−
** [[pantograph]]-[[esiliculosus]]
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−
== Pathways associated ==
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−
* [[PWY0-1021]]
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−
* [[PWY-6823]]
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−
* [[PWY-7250]]
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−
* [[PWY-6892]]
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* [[PWY-6891]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=53}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12540 12540]
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{{#set: right end position=2586}}
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* LIGAND-RXN:
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{{#set: centisome position=0.3513657    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038]
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{{#set: reaction associated=RXN-12587|RXN-12588|RXN-14382|RXN-14384|RXN-14385|RXN-14386|RXN-15881|RXN-9787|RXN0-308}}
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* UNIPROT:
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{{#set: pathway associated=PWY0-1021|PWY-6823|PWY-7250|PWY-6892|PWY-6891}}
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** [http://www.uniprot.org/uniprot/P56452 P56452]
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** [http://www.uniprot.org/uniprot/O27718 O27718]
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** [http://www.uniprot.org/uniprot/O34526 O34526]
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** [http://www.uniprot.org/uniprot/P47534 P47534]
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** [http://www.uniprot.org/uniprot/O58035 O58035]
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** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05]
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** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4]
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** [http://www.uniprot.org/uniprot/Q57984 Q57984]
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** [http://www.uniprot.org/uniprot/O51238 O51238]
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** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0]
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** [http://www.uniprot.org/uniprot/O83980 O83980]
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** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6]
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** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5]
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** [http://www.uniprot.org/uniprot/O67323 O67323]
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** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4]
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** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714]
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** [http://www.uniprot.org/uniprot/P49588 P49588]
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** [http://www.uniprot.org/uniprot/P43815 P43815]
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** [http://www.uniprot.org/uniprot/P50475 P50475]
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** [http://www.uniprot.org/uniprot/P24075 P24075]
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** [http://www.uniprot.org/uniprot/P27866 P27866]
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** [http://www.uniprot.org/uniprot/P35029 P35029]
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** [http://www.uniprot.org/uniprot/P40825 P40825]
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** [http://www.uniprot.org/uniprot/P75368 P75368]
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** [http://www.uniprot.org/uniprot/Q48976 Q48976]
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** [http://www.uniprot.org/uniprot/P00957 P00957]
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** [http://www.uniprot.org/uniprot/P21894 P21894]
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** [http://www.uniprot.org/uniprot/O50189 O50189]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=threonine_alanine_trna_ligase_subfamily_protein}}
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{{#set: common name=ORF}}
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{{#set: common name=alanyl-trna_synthetase}}
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{{#set: ec number=EC-6.1.1.7}}
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{{#set: gene associated=Tiso_gene_2298|Tiso_gene_3249|Tiso_gene_18607|Tiso_gene_18609|Tiso_gene_19573}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:07, 21 March 2018

Reaction ALANINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • threonine_alanine_trna_ligase_subfamily_protein
    • ORF
    • alanyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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