Difference between revisions of "THYMIDYLATESYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] == * direction: ** LEFT-TO-RIGHT...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidyla...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THYMIDYLATESYN-RXN THYMIDYLATESYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** polyketide_synthase
+
** thymidylate_synthase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.1.1.45 EC-2.1.1.45]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OH-ACYL-ACP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c]
+
** 1 [[DUMP]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[TMP]][c] '''+''' 1 [[DIHYDROFOLATE-GLU-N]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-2-enoyl-[acyl-carrier protein][c]
+
** 1 dUMP[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c] '''=>''' 1 dTMP[c] '''+''' 1 a 7,8-dihydrofolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_136]]
+
* Gene: [[Tiso_gene_7708]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_500]]
+
* Gene: [[Tiso_gene_18478]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_6884]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated: [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
+
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''12''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[experimental_annotation]]
+
* Category: [[annotation]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12104 12104]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10208 R10208]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02101 R02101]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A6Q3 P0A6Q3]
+
** [http://www.uniprot.org/uniprot/P19368 P19368]
−
** [http://www.uniprot.org/uniprot/P45159 P45159]
+
** [http://www.uniprot.org/uniprot/Q07422 Q07422]
 +
** [http://www.uniprot.org/uniprot/P47469 P47469]
 +
** [http://www.uniprot.org/uniprot/Q9JT57 Q9JT57]
 +
** [http://www.uniprot.org/uniprot/P42326 P42326]
 +
** [http://www.uniprot.org/uniprot/O02604 O02604]
 +
** [http://www.uniprot.org/uniprot/P07382 P07382]
 +
** [http://www.uniprot.org/uniprot/P16126 P16126]
 +
** [http://www.uniprot.org/uniprot/P13922 P13922]
 +
** [http://www.uniprot.org/uniprot/P20712 P20712]
 +
** [http://www.uniprot.org/uniprot/P11044 P11044]
 +
** [http://www.uniprot.org/uniprot/P45350 P45350]
 +
** [http://www.uniprot.org/uniprot/P45352 P45352]
 +
** [http://www.uniprot.org/uniprot/P51820 P51820]
 +
** [http://www.uniprot.org/uniprot/P0C0M4 P0C0M4]
 +
** [http://www.uniprot.org/uniprot/Q27828 Q27828]
 +
** [http://www.uniprot.org/uniprot/P09249 P09249]
 +
** [http://www.uniprot.org/uniprot/P12462 P12462]
 +
** [http://www.uniprot.org/uniprot/P07606 P07606]
 +
** [http://www.uniprot.org/uniprot/P00471 P00471]
 +
** [http://www.uniprot.org/uniprot/P0A884 P0A884]
 +
** [http://www.uniprot.org/uniprot/P00469 P00469]
 +
** [http://www.uniprot.org/uniprot/O81395 O81395]
 +
** [http://www.uniprot.org/uniprot/Q05763 Q05763]
 +
** [http://www.uniprot.org/uniprot/Q39687 Q39687]
 +
** [http://www.uniprot.org/uniprot/Q9YTJ6 Q9YTJ6]
 +
** [http://www.uniprot.org/uniprot/P06785 P06785]
 +
** [http://www.uniprot.org/uniprot/P04818 P04818]
 +
** [http://www.uniprot.org/uniprot/P07607 P07607]
 +
** [http://www.uniprot.org/uniprot/P13100 P13100]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: common name=thymidylate_synthase}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: ec number=EC-2.1.1.45}}
−
{{#set: ec number=EC-4.2.1.59}}
+
{{#set: gene associated=Tiso_gene_7708|Tiso_gene_18478}}
−
{{#set: gene associated=Tiso_gene_136|Tiso_gene_500|Tiso_gene_6884|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13394}}
+
{{#set: in pathway=PWY-7210|PWY-7198|PWY-7199|PWY-3841|1CMET2-PWY|PWY-7187|PWY0-166|PWY-7184}}
−
{{#set: in pathway=FASYN-ELONG-PWY}}
+
{{#set: reconstruction category=manual|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:08, 21 March 2018

Reaction THYMIDYLATESYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thymidylate_synthase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7199, pyrimidine deoxyribonucleosides salvage: PWY-7199
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-3841, folate transformations II: PWY-3841
    • 9 reactions found over 11 reactions in the full pathway
  • 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7187, pyrimidine deoxyribonucleotides de novo biosynthesis II: PWY-7187
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 12 reactions found over 17 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=THYMIDYLATESYN-RXN&oldid=46172"