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− | [[Category:Reaction]] | + | [[Category:Pathway]] |
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5664 PWY-5664] == |
− | * direction: | + | * taxonomic range: |
− | ** REVERSIBLE | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208] |
| * common name: | | * common name: |
− | ** udp-glucose_4-epimerase_5 | + | ** tetrahydrobiopterin biosynthesis II |
− | ** udp-glucose_4-epimerase
| + | |
− | * ec number:
| + | |
− | ** [http://enzyme.expasy.org/EC/5.1.3.2 EC-5.1.3.2]
| + | |
| * Synonym(s): | | * Synonym(s): |
| | | |
− | == Reaction Formula == | + | == Reaction(s) found == |
− | * With identifiers:
| + | '''1''' reactions found over '''4''' reactions in the full pathway |
− | ** 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
| + | * [[GTP-CYCLOHYDRO-I-RXN]] |
− | * With common name(s):
| + | ** 1 associated gene(s): |
− | ** 1 UDP-α-D-glucose[c] '''<=>''' 1 UDP-α-D-galactose[c]
| + | *** [[Tiso_gene_12736]] |
− | | + | ** 3 reconstruction source(s) associated: |
− | == Genes associated with this reaction ==
| + | *** [[orthology-creinhardtii]] |
− | Genes have been associated with this reaction based on different elements listed below.
| + | *** [[orthology-synechocystis]] |
− | * [[Tiso_gene_10797]] | + | *** [[orthology-esiliculosus]] |
− | ** [[pantograph]]-[[athaliana]]
| + | == Reaction(s) not found == |
− | ** [[pantograph]]-[[esiliculosus]]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.220-RXN 1.1.1.220-RXN] |
− | * [[Tiso_gene_3236]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=4.2.3.12-RXN 4.2.3.12-RXN] |
− | ** IN-SILICO_ANNOTATION | + | * [http://metacyc.org/META/NEW-IMAGE?object=RXN-8854 RXN-8854] |
− | ***AUTOMATED-NAME-MATCH | + | |
− | ** [[pantograph]]-[[synechocystis]] | + | |
− | ** [[pantograph]]-[[esiliculosus]] | + | |
− | * [[Tiso_gene_15395]] | + | |
− | ** [[pantograph]]-[[athaliana]] | + | |
− | * [[Tiso_gene_9823]] | + | |
− | ** IN-SILICO_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** EXPERIMENTAL_ANNOTATION
| + | |
− | ***EC-NUMBER
| + | |
− | ** [[pantograph]]-[[athaliana]] | + | |
− | ** [[pantograph]]-[[synechocystis]] | + | |
− | ** [[pantograph]]-[[esiliculosus]] | + | |
− | == Pathways == | + | |
− | * [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821] | + | |
− | ** '''3''' reactions found over '''3''' reactions in the full pathway | + | |
− | * [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
| + | |
− | ** '''2''' reactions found over '''17''' reactions in the full pathway
| + | |
− | * [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
| + | |
− | ** '''5''' reactions found over '''11''' reactions in the full pathway
| + | |
− | * [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
| + | |
− | ** '''7''' reactions found over '''7''' reactions in the full pathway
| + | |
− | * [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
| + | |
− | ** '''5''' reactions found over '''10''' reactions in the full pathway
| + | |
− | * [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
| + | |
− | ** '''5''' reactions found over '''5''' reactions in the full pathway
| + | |
− | * [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
| + | |
− | ** '''5''' reactions found over '''5''' reactions in the full pathway
| + | |
− | * [[PWY-7344]], UDP-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344] | + | |
− | ** '''1''' reactions found over '''1''' reactions in the full pathway
| + | |
− | == Reconstruction information ==
| + | |
− | * [[orthology]]:
| + | |
− | ** [[pantograph]]:
| + | |
− | *** [[synechocystis]]
| + | |
− | *** [[athaliana]]
| + | |
− | *** [[esiliculosus]]
| + | |
− | * [[annotation]]:
| + | |
− | ** [[pathwaytools]]:
| + | |
− | *** [[experimental_annotation]]
| + | |
− | *** [[in-silico_annotation]]
| + | |
| == External links == | | == External links == |
− | * RHEA:
| + | {{#set: taxonomic range=TAX-33208}} |
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22168 22168]
| + | {{#set: common name=tetrahydrobiopterin biosynthesis II}} |
− | * LIGAND-RXN:
| + | {{#set: reaction found=1}} |
− | ** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
| + | {{#set: total reaction=4}} |
− | * UNIPROT:
| + | {{#set: completion rate=25.0}} |
− | ** [http://www.uniprot.org/uniprot/P35673 P35673]
| + | |
− | ** [http://www.uniprot.org/uniprot/P22715 P22715]
| + | |
− | ** [http://www.uniprot.org/uniprot/P21977 P21977]
| + | |
− | ** [http://www.uniprot.org/uniprot/P24325 P24325]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q57664 Q57664]
| + | |
− | ** [http://www.uniprot.org/uniprot/P55180 P55180]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
| + | |
− | ** [http://www.uniprot.org/uniprot/P56997 P56997]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q59083 Q59083]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q44016 Q44016]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q45291 Q45291]
| + | |
− | ** [http://www.uniprot.org/uniprot/P96995 P96995]
| + | |
− | ** [http://www.uniprot.org/uniprot/P45602 P45602]
| + | |
− | ** [http://www.uniprot.org/uniprot/P18645 P18645]
| + | |
− | ** [http://www.uniprot.org/uniprot/P26503 P26503]
| + | |
− | ** [http://www.uniprot.org/uniprot/P40801 P40801]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q05026 Q05026]
| + | |
− | ** [http://www.uniprot.org/uniprot/P56985 P56985]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q51148 Q51148]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q56093 Q56093]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q42605 Q42605]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q60109 Q60109]
| + | |
− | ** [http://www.uniprot.org/uniprot/P72903 P72903]
| + | |
− | ** [http://www.uniprot.org/uniprot/P72915 P72915]
| + | |
− | ** [http://www.uniprot.org/uniprot/O66256 O66256]
| + | |
− | ** [http://www.uniprot.org/uniprot/O64749 O64749]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q43070 Q43070]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
| + | |
− | ** [http://www.uniprot.org/uniprot/O65780 O65780]
| + | |
− | ** [http://www.uniprot.org/uniprot/O65781 O65781]
| + | |
− | ** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
| + | |
− | ** [http://www.uniprot.org/uniprot/P04397 P04397]
| + | |
− | ** [http://www.uniprot.org/uniprot/P09147 P09147]
| + | |
− | ** [http://www.uniprot.org/uniprot/P13226 P13226]
| + | |
− | ** [http://www.uniprot.org/uniprot/P09609 P09609]
| + | |
− | {{#set: direction=REVERSIBLE}} | + | |
− | {{#set: common name=udp-glucose_4-epimerase_5}}
| + | |
− | {{#set: common name=udp-glucose_4-epimerase}} | + | |
− | {{#set: ec number=EC-5.1.3.2}} | + | |
− | {{#set: gene associated=Tiso_gene_10797|Tiso_gene_3236|Tiso_gene_15395|Tiso_gene_9823}} | + | |
− | {{#set: in pathway=PWY-3821|PWY-6397|COLANSYN-PWY|PWY-6527|PWY-7328|PWY-6317|PWY66-422|PWY-7344}} | + | |
− | {{#set: reconstruction category=orthology}}
| + | |
− | {{#set: reconstruction tool=pantograph}}
| + | |
− | {{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
| + | |
− | {{#set: reconstruction category=annotation}}
| + | |
− | {{#set: reconstruction tool=pathwaytools}}
| + | |
− | {{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
| + | |