Difference between revisions of "TYROSINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SIROHYDROCHLORIN SIROHYDROCHLORIN] == * smiles: ** CC2(CC(=O)[O-])(C1(=CC5(=NC(=CC4(NC(C=C3(N=C...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE--TRNA-LIGASE-RXN TYROSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SIROHYDROCHLORIN SIROHYDROCHLORIN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TYROSINE--TRNA-LIGASE-RXN TYROSINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
−
** CC2(CC(=O)[O-])(C1(=CC5(=NC(=CC4(NC(C=C3(N=C(C=C(N1)C(CCC(=O)[O-])2)C(CC(=O)[O-])=C(CCC(=O)[O-])3))=C(CCC(=O)[O-])C(CC(=O)[O-])=4))C(C)(CC(=O)[O-])C(CCC(=O)[O-])5)))
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** LEFT-TO-RIGHT
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* inchi key:
+
−
** InChIKey=KWIZRXMMFRBUML-AHGFGAHVSA-F
+
 
* common name:
 
* common name:
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** sirohydrochlorin
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** mitochondrial_tyrosyl-trna_synthetase
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* molecular weight:
+
** methionyl-trna
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** 854.779   
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** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.1 EC-6.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
−
** Precorrin
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[DIMETHUROPORDEHYDROG-RXN]]
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** 1 [[TYR]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[TYR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-TYR-tRNAs]][c]
−
== Reaction(s) of unknown directionality ==
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* With common name(s):
 +
** 1 L-tyrosine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAtyr[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-tyrosyl-[tRNAtyr][c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_10378]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4174]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_12171]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4175]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 65207-12-7
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10220 10220]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245154 25245154]
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* LIGAND-RXN:
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* CHEBI:
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** [http://www.genome.jp/dbget-bin/www_bget?R02918 R02918]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58351 58351]
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* UNIPROT:
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* BIGG : scl
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** [http://www.uniprot.org/uniprot/P28669 P28669]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P22326 P22326]
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** [http://www.genome.jp/dbget-bin/www_bget?C05778 C05778]
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** [http://www.uniprot.org/uniprot/P36421 P36421]
−
{{#set: smiles=CC2(CC(=O)[O-])(C1(=CC5(=NC(=CC4(NC(C=C3(N=C(C=C(N1)C(CCC(=O)[O-])2)C(CC(=O)[O-])=C(CCC(=O)[O-])3))=C(CCC(=O)[O-])C(CC(=O)[O-])=4))C(C)(CC(=O)[O-])C(CCC(=O)[O-])5)))}}
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** [http://www.uniprot.org/uniprot/P41256 P41256]
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{{#set: inchi key=InChIKey=KWIZRXMMFRBUML-AHGFGAHVSA-F}}
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** [http://www.uniprot.org/uniprot/O51343 O51343]
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{{#set: common name=sirohydrochlorin}}
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** [http://www.uniprot.org/uniprot/Q9PN27 Q9PN27]
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{{#set: molecular weight=854.779    }}
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** [http://www.uniprot.org/uniprot/Q9CIH5 Q9CIH5]
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{{#set: common name=Precorrin}}
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** [http://www.uniprot.org/uniprot/Q9ZL69 Q9ZL69]
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{{#set: produced by=DIMETHUROPORDEHYDROG-RXN}}
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** [http://www.uniprot.org/uniprot/P47693 P47693]
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** [http://www.uniprot.org/uniprot/Q9ZCZ4 Q9ZCZ4]
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** [http://www.uniprot.org/uniprot/P43836 P43836]
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** [http://www.uniprot.org/uniprot/O83806 O83806]
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** [http://www.uniprot.org/uniprot/Q57834 Q57834]
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** [http://www.uniprot.org/uniprot/P56417 P56417]
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** [http://www.uniprot.org/uniprot/O67632 O67632]
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** [http://www.uniprot.org/uniprot/O58739 O58739]
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** [http://www.uniprot.org/uniprot/Q9WYU8 Q9WYU8]
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** [http://www.uniprot.org/uniprot/O27795 O27795]
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** [http://www.uniprot.org/uniprot/O84065 O84065]
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** [http://www.uniprot.org/uniprot/Q9JVY6 Q9JVY6]
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** [http://www.uniprot.org/uniprot/P48527 P48527]
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** [http://www.uniprot.org/uniprot/Q49900 Q49900]
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** [http://www.uniprot.org/uniprot/P75122 P75122]
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** [http://www.uniprot.org/uniprot/P73141 P73141]
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** [http://www.uniprot.org/uniprot/P73144 P73144]
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** [http://www.uniprot.org/uniprot/P95982 P95982]
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** [http://www.uniprot.org/uniprot/P00952 P00952]
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** [http://www.uniprot.org/uniprot/P04077 P04077]
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** [http://www.uniprot.org/uniprot/P0AGJ9 P0AGJ9]
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** [http://www.uniprot.org/uniprot/P12063 P12063]
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** [http://www.uniprot.org/uniprot/P93363 P93363]
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** [http://www.uniprot.org/uniprot/O14055 O14055]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=mitochondrial_tyrosyl-trna_synthetase}}
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{{#set: common name=methionyl-trna}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-6.1.1.1}}
 +
{{#set: gene associated=Tiso_gene_10378|Tiso_gene_4174|Tiso_gene_12171|Tiso_gene_4175}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:09, 21 March 2018

Reaction TYROSINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • mitochondrial_tyrosyl-trna_synthetase
    • methionyl-trna
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-tyrosine[c] + 1 ATP[c] + 1 a tRNAtyr[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-tyrosyl-[tRNAtyr][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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