Difference between revisions of "Tiso gene 13382"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
 
(Created page with "Category:Gene == Gene Tiso_gene_13382 == * right end position: ** 4679 * transcription direction: ** POSITIVE * left end position: ** 145 * centisome position: ** 2.289594...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] ==
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== Gene Tiso_gene_13382 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4679
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* common name:
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* transcription direction:
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** riboflavin_biosynthesis_protein
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.5.4.26 EC-3.5.4.26]
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** 145
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* centisome position:
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** 2.2895942   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PORPHOBILSYNTH-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 5-amino-6-(5-phospho-D-ribosylamino)uracil[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-synechocystis]]
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* [[Tiso_gene_1389]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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== Pathways associated ==
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** [[pantograph]]-[[athaliana]]
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* [[PWY-5189]]
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** [[pantograph]]-[[synechocystis]]
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* [[PWY-5188]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4679}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21868 21868]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=145}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
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{{#set: centisome position=2.2895942    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=PORPHOBILSYNTH-RXN}}
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{{#set: common name=riboflavin_biosynthesis_protein}}
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{{#set: pathway associated=PWY-5189|PWY-5188}}
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{{#set: ec number=EC-3.5.4.26}}
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{{#set: gene associated=Tiso_gene_1389}}
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{{#set: in pathway=RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:09, 21 March 2018

Gene Tiso_gene_13382

  • right end position:
    • 4679
  • transcription direction:
    • POSITIVE
  • left end position:
    • 145
  • centisome position:
    • 2.2895942
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13382&oldid=46441"