Difference between revisions of "Tiso gene 4975"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TOCOPHEROL-O-METHYLTRANSFERASE-RXN TOCOPHEROL-O-METHYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-R...")
 
(Created page with "Category:Gene == Gene Tiso_gene_4975 == * right end position: ** 12260 * transcription direction: ** POSITIVE * left end position: ** 8336 * centisome position: ** 59.1835...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TOCOPHEROL-O-METHYLTRANSFERASE-RXN TOCOPHEROL-O-METHYLTRANSFERASE-RXN] ==
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== Gene Tiso_gene_4975 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 12260
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.1.1.95 EC-2.1.1.95]
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** POSITIVE
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* left end position:
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** 8336
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* centisome position:
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** 59.183525   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[CARBPSYN-RXN]]
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[GAMA-TOCOPHEROL]][c] '''=>''' 1 [[ALPHA-TOCOPHEROL]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 γ-tocopherol[c] '''=>''' 1 α-tocopherol[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 H+[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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* Reaction: [[GLUTAMIN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_6738]]
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*** Assignment: ec-number
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** [[pantograph]]-[[synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: automated-name-match
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== Pathways ==
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* Reaction: [[RXN-13202]]
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* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
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** Source: [[annotation-in-silico_annotation]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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*** Assignment: ec-number
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== Reconstruction information  ==
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** Source: [[annotation-experimental_annotation]]
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* [[orthology]]:
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*** Assignment: ec-number
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** [[pantograph]]:
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* Reaction: [[RXN-14196]]
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*** [[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[synechocystis]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16909]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-16910]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-4984]]
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* [[GLUTAMINDEG-PWY]]
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* [[ARGSYN-PWY]]
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* [[PWY-5154]]
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* [[PWY-7400]]
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* [[ARGSYNBSUB-PWY]]
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* [[PWY-7693]]
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* [[PWY-7790]]
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* [[PWY-7791]]
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* [[PWY-5686]]
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* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=12260}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24012 24012]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=8336}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07236 R07236]
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{{#set: centisome position=59.183525    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=CARBPSYN-RXN|GLUTAMIN-RXN|RXN-13202|RXN-14196|RXN-16909|RXN-16910}}
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{{#set: ec number=EC-2.1.1.95}}
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{{#set: pathway associated=PWY-4984|GLUTAMINDEG-PWY|ARGSYN-PWY|PWY-5154|PWY-7400|ARGSYNBSUB-PWY|PWY-7693|PWY-7790|PWY-7791|PWY-5686|CITRULBIO-PWY}}
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{{#set: gene associated=Tiso_gene_6738}}
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{{#set: in pathway=PWY-1422}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis}}
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Latest revision as of 20:09, 21 March 2018

Gene Tiso_gene_4975

  • right end position:
    • 12260
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8336
  • centisome position:
    • 59.183525
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4975&oldid=46444"