Difference between revisions of "Tiso gene 10617"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase...")
 
(Created page with "Category:Gene == Gene Tiso_gene_10617 == * right end position: ** 5351 * transcription direction: ** POSITIVE * left end position: ** 2539 * centisome position: ** 30.1902...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] ==
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== Gene Tiso_gene_10617 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5351
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* common name:
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* transcription direction:
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** Adenylate kinase (Fragment) n
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** POSITIVE
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** ORF
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* left end position:
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** adenylate_kinase
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** 2539
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** adenylate_kinase_4
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* centisome position:
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** central_pair_complex_1
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** 30.19025   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.3 EC-2.7.4.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADPREDUCT-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[AMP]][c] '''=>''' 2 [[ADP]][c]
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** Source: [[annotation-experimental_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 AMP[c] '''=>''' 2 ADP[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[CDPREDUCT-RXN]]
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* [[Tiso_gene_694]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
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* [[Tiso_gene_5837]]
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** Source: [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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* Reaction: [[GDPREDUCT-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[orthology-athaliana]]
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* [[Tiso_gene_12257]]
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* Reaction: [[RIBONUCLEOSIDE-DIP-REDUCTI-RXN]]
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* [[Tiso_gene_4816]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_5839]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[RIBONUCLEOSIDE-DIP-REDUCTII-RXN]]
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: ec-number
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* [[Tiso_gene_19036]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN0-722]]
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[synechocystis]]
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* Reaction: [[RXN0-747]]
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* [[Tiso_gene_12256]]
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** Source: [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_8576]]
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* Reaction: [[RXN0-748]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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* [[Tiso_gene_5387]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[UDPREDUCT-RXN]]
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_5081]]
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== Pathways associated ==
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-7210]]
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* [[Tiso_gene_1453]]
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* [[PWY-7198]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-7220]]
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* [[Tiso_gene_14116]]
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* [[PWY-7184]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-7222]]
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* [[Tiso_gene_13477]]
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* [[PWY0-166]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-7227]]
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* [[Tiso_gene_5388]]
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* [[PWY-7226]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6545]]
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***EC-NUMBER
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−
** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[creinhardtii]]
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−
* [[Tiso_gene_805]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_3353]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_19734]]
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** [[pantograph]]-[[esiliculosus]]
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−
== Pathways  ==
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* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5351}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2539}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127]
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{{#set: centisome position=30.19025    }}
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* UNIPROT:
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{{#set: reaction associated=ADPREDUCT-RXN|CDPREDUCT-RXN|GDPREDUCT-RXN|RIBONUCLEOSIDE-DIP-REDUCTI-RXN|RIBONUCLEOSIDE-DIP-REDUCTII-RXN|RXN0-722|RXN0-747|RXN0-748|UDPREDUCT-RXN}}
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** [http://www.uniprot.org/uniprot/P05081 P05081]
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7220|PWY-7184|PWY-7222|PWY0-166|PWY-7227|PWY-7226|PWY-6545}}
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** [http://www.uniprot.org/uniprot/P20425 P20425]
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** [http://www.uniprot.org/uniprot/P08166 P08166]
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** [http://www.uniprot.org/uniprot/P38372 P38372]
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** [http://www.uniprot.org/uniprot/O27699 O27699]
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** [http://www.uniprot.org/uniprot/O29581 O29581]
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** [http://www.uniprot.org/uniprot/O59443 O59443]
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** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2]
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** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1]
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** [http://www.uniprot.org/uniprot/P58117 P58117]
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** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8]
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** [http://www.uniprot.org/uniprot/P54819 P54819]
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** [http://www.uniprot.org/uniprot/O66490 O66490]
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** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9]
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** [http://www.uniprot.org/uniprot/P49973 P49973]
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** [http://www.uniprot.org/uniprot/P24323 P24323]
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** [http://www.uniprot.org/uniprot/P47417 P47417]
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** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7]
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** [http://www.uniprot.org/uniprot/P29410 P29410]
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** [http://www.uniprot.org/uniprot/P16304 P16304]
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** [http://www.uniprot.org/uniprot/P00570 P00570]
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** [http://www.uniprot.org/uniprot/P27142 P27142]
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** [http://www.uniprot.org/uniprot/P07170 P07170]
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** [http://www.uniprot.org/uniprot/P12115 P12115]
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** [http://www.uniprot.org/uniprot/P69441 P69441]
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** [http://www.uniprot.org/uniprot/P00568 P00568]
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** [http://www.uniprot.org/uniprot/P10772 P10772]
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** [http://www.uniprot.org/uniprot/P00571 P00571]
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** [http://www.uniprot.org/uniprot/P00569 P00569]
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** [http://www.uniprot.org/uniprot/P10251 P10251]
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** [http://www.uniprot.org/uniprot/P43417 P43417]
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** [http://www.uniprot.org/uniprot/P49974 P49974]
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** [http://www.uniprot.org/uniprot/P33107 P33107]
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** [http://www.uniprot.org/uniprot/P27143 P27143]
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** [http://www.uniprot.org/uniprot/P26364 P26364]
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** [http://www.uniprot.org/uniprot/P33075 P33075]
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** [http://www.uniprot.org/uniprot/P35140 P35140]
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** [http://www.uniprot.org/uniprot/P35141 P35141]
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** [http://www.uniprot.org/uniprot/P39068 P39068]
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** [http://www.uniprot.org/uniprot/P34346 P34346]
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** [http://www.uniprot.org/uniprot/P43188 P43188]
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** [http://www.uniprot.org/uniprot/P69344 P69344]
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** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6]
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** [http://www.uniprot.org/uniprot/P49979 P49979]
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** [http://www.uniprot.org/uniprot/Q50299 Q50299]
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** [http://www.uniprot.org/uniprot/P43412 P43412]
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** [http://www.uniprot.org/uniprot/P72641 P72641]
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−
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Adenylate kinase (Fragment) n}}
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−
{{#set: common name=ORF}}
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−
{{#set: common name=adenylate_kinase}}
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−
{{#set: common name=adenylate_kinase_4}}
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{{#set: common name=central_pair_complex_1}}
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{{#set: ec number=EC-2.7.4.3}}
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−
{{#set: gene associated=Tiso_gene_694|Tiso_gene_5837|Tiso_gene_12257|Tiso_gene_4816|Tiso_gene_5839|Tiso_gene_19036|Tiso_gene_12256|Tiso_gene_8576|Tiso_gene_5387|Tiso_gene_5081|Tiso_gene_1453|Tiso_gene_14116|Tiso_gene_13477|Tiso_gene_5388|Tiso_gene_805|Tiso_gene_3353|Tiso_gene_19734}}
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−
{{#set: in pathway=PWY-7219}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:10, 21 March 2018

Gene Tiso_gene_10617

  • right end position:
    • 5351
  • transcription direction:
    • POSITIVE
  • left end position:
    • 2539
  • centisome position:
    • 30.19025
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10617&oldid=46551"