Difference between revisions of "ADENYL-KIN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-650 CPD-650] == * smiles: ** CC(CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-650 CPD-650] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] ==
−
* smiles:
+
* direction:
−
** CC(CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)O
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=QHHKKMYHDBRONY-WZZMXTMRSA-J
+
 
* common name:
 
* common name:
−
** (3R)-3-hydroxybutanoyl-CoA
+
** Adenylate kinase (Fragment) n
−
* molecular weight:
+
** ORF
−
** 849.593   
+
** adenylate_kinase
 +
** adenylate_kinase_4
 +
** central_pair_complex_1
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.4.3 EC-2.7.4.3]
 
* Synonym(s):
 
* Synonym(s):
−
** 3-OH-butyryl-CoA
 
−
** OH-butyryl-CoA
 
−
** β-hydroxybutyryl-S-CoA
 
−
** D-3-hydroxybutyryl-CoA
 
−
** hydroxy-butyryl-CoA
 
−
** β-hydroxybutyryl-CoA
 
−
** 3-hydroxybutyryl-CoA
 
−
** (3R)-3-Hydroxybutanoyl-CoA
 
−
** 3-hydroxybutanoyl-CoA
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN-5901]]
+
** 1 [[AMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 2 [[ADP]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 AMP[c] '''+''' 1 ATP[c] '''=>''' 2 ADP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_4816]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5837]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_694]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_805]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14116]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19036]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
* Gene: [[Tiso_gene_5388]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_13477]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5081]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5839]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_19734]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1453]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3353]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12257]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_12256]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_5387]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_8576]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266552 45266552]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
−
* UM-BBD-CPD : c0030
+
* LIGAND-RXN:
−
* CHEBI:
+
** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57315 57315]
+
* UNIPROT:
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/P05081 P05081]
−
** [http://www.genome.jp/dbget-bin/www_bget?C03561 C03561]
+
** [http://www.uniprot.org/uniprot/P20425 P20425]
−
* HMDB : HMDB01166
+
** [http://www.uniprot.org/uniprot/P08166 P08166]
−
{{#set: smiles=CC(CC(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-])=O)O}}
+
** [http://www.uniprot.org/uniprot/P38372 P38372]
−
{{#set: inchi key=InChIKey=QHHKKMYHDBRONY-WZZMXTMRSA-J}}
+
** [http://www.uniprot.org/uniprot/O27699 O27699]
−
{{#set: common name=(3R)-3-hydroxybutanoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/O29581 O29581]
−
{{#set: molecular weight=849.593    }}
+
** [http://www.uniprot.org/uniprot/O59443 O59443]
−
{{#set: common name=3-OH-butyryl-CoA|OH-butyryl-CoA|β-hydroxybutyryl-S-CoA|D-3-hydroxybutyryl-CoA|hydroxy-butyryl-CoA|β-hydroxybutyryl-CoA|3-hydroxybutyryl-CoA|(3R)-3-Hydroxybutanoyl-CoA|3-hydroxybutanoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2]
−
{{#set: produced by=RXN-5901}}
+
** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1]
 +
** [http://www.uniprot.org/uniprot/P58117 P58117]
 +
** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8]
 +
** [http://www.uniprot.org/uniprot/P54819 P54819]
 +
** [http://www.uniprot.org/uniprot/O66490 O66490]
 +
** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9]
 +
** [http://www.uniprot.org/uniprot/P49973 P49973]
 +
** [http://www.uniprot.org/uniprot/P24323 P24323]
 +
** [http://www.uniprot.org/uniprot/P47417 P47417]
 +
** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7]
 +
** [http://www.uniprot.org/uniprot/P29410 P29410]
 +
** [http://www.uniprot.org/uniprot/P16304 P16304]
 +
** [http://www.uniprot.org/uniprot/P00570 P00570]
 +
** [http://www.uniprot.org/uniprot/P27142 P27142]
 +
** [http://www.uniprot.org/uniprot/P07170 P07170]
 +
** [http://www.uniprot.org/uniprot/P12115 P12115]
 +
** [http://www.uniprot.org/uniprot/P69441 P69441]
 +
** [http://www.uniprot.org/uniprot/P00568 P00568]
 +
** [http://www.uniprot.org/uniprot/P10772 P10772]
 +
** [http://www.uniprot.org/uniprot/P00571 P00571]
 +
** [http://www.uniprot.org/uniprot/P00569 P00569]
 +
** [http://www.uniprot.org/uniprot/P10251 P10251]
 +
** [http://www.uniprot.org/uniprot/P43417 P43417]
 +
** [http://www.uniprot.org/uniprot/P49974 P49974]
 +
** [http://www.uniprot.org/uniprot/P33107 P33107]
 +
** [http://www.uniprot.org/uniprot/P27143 P27143]
 +
** [http://www.uniprot.org/uniprot/P26364 P26364]
 +
** [http://www.uniprot.org/uniprot/P33075 P33075]
 +
** [http://www.uniprot.org/uniprot/P35140 P35140]
 +
** [http://www.uniprot.org/uniprot/P35141 P35141]
 +
** [http://www.uniprot.org/uniprot/P39068 P39068]
 +
** [http://www.uniprot.org/uniprot/P34346 P34346]
 +
** [http://www.uniprot.org/uniprot/P43188 P43188]
 +
** [http://www.uniprot.org/uniprot/P69344 P69344]
 +
** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6]
 +
** [http://www.uniprot.org/uniprot/P49979 P49979]
 +
** [http://www.uniprot.org/uniprot/Q50299 Q50299]
 +
** [http://www.uniprot.org/uniprot/P43412 P43412]
 +
** [http://www.uniprot.org/uniprot/P72641 P72641]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Adenylate kinase (Fragment) n}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=adenylate_kinase}}
 +
{{#set: common name=adenylate_kinase_4}}
 +
{{#set: common name=central_pair_complex_1}}
 +
{{#set: ec number=EC-2.7.4.3}}
 +
{{#set: gene associated=Tiso_gene_4816|Tiso_gene_5837|Tiso_gene_694|Tiso_gene_805|Tiso_gene_14116|Tiso_gene_19036|Tiso_gene_5388|Tiso_gene_13477|Tiso_gene_5081|Tiso_gene_5839|Tiso_gene_19734|Tiso_gene_1453|Tiso_gene_3353|Tiso_gene_12257|Tiso_gene_12256|Tiso_gene_5387|Tiso_gene_8576}}
 +
{{#set: in pathway=PWY-7219}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:10, 21 March 2018

Reaction ADENYL-KIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Adenylate kinase (Fragment) n
    • ORF
    • adenylate_kinase
    • adenylate_kinase_4
    • central_pair_complex_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 AMP[c] + 1 ATP[c] => 2 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7219, adenosine ribonucleotides de novo biosynthesis: PWY-7219
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links







Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ADENYL-KIN-RXN&oldid=46566"