Difference between revisions of "URPHOS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=URPHOS-RXN URPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** uridine_phosphorylase * ec n...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=URPHOS-RXN URPHOS-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** ORF
+
** uridine_phosphorylase
−
** structural_maintenance_of_chromosomes_protein_6
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
+
** [http://enzyme.expasy.org/EC/2.4.2.2 EC-2.4.2.2]
 +
** [http://enzyme.expasy.org/EC/2.4.2.3 EC-2.4.2.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[SER-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c]
+
** 1 [[Pi]][c] '''+''' 1 [[URIDINE]][c] '''<=>''' 1 [[URACIL]][c] '''+''' 1 [[RIBOSE-1P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 L-serine[c] '''+''' 1 a tRNAser[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-seryl-[tRNAser][c]
+
** 1 phosphate[c] '''+''' 1 uridine[c] '''<=>''' 1 uracil[c] '''+''' 1 &alpha;-D-ribose-1-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_587]]
+
* Gene: [[Tiso_gene_20384]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1682]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1684]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10015]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5532 PWY-5532]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY0-1295]], pyrimidine ribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1295 PWY0-1295]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12292 12292]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24388 24388]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01876 R01876]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
+
** [http://www.uniprot.org/uniprot/P52624 P52624]
−
** [http://www.uniprot.org/uniprot/O51244 O51244]
+
** [http://www.uniprot.org/uniprot/P43770 P43770]
−
** [http://www.uniprot.org/uniprot/O66647 O66647]
+
** [http://www.uniprot.org/uniprot/Q16831 Q16831]
−
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
+
** [http://www.uniprot.org/uniprot/P12758 P12758]
−
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
+
** [http://www.uniprot.org/uniprot/P19662 P19662]
−
** [http://www.uniprot.org/uniprot/O27194 O27194]
+
** [http://www.uniprot.org/uniprot/O08444 O08444]
−
** [http://www.uniprot.org/uniprot/O84734 O84734]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
+
{{#set: common name=uridine_phosphorylase}}
−
** [http://www.uniprot.org/uniprot/P47251 P47251]
+
{{#set: ec number=EC-2.4.2.2}}
−
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
+
{{#set: ec number=EC-2.4.2.3}}
−
** [http://www.uniprot.org/uniprot/O83653 O83653]
+
{{#set: gene associated=Tiso_gene_20384}}
−
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
+
{{#set: in pathway=PWY-5532|PWY0-1295}}
−
** [http://www.uniprot.org/uniprot/P49591 P49591]
+
−
** [http://www.uniprot.org/uniprot/P56458 P56458]
+
−
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
+
−
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
+
−
** [http://www.uniprot.org/uniprot/P43833 P43833]
+
−
** [http://www.uniprot.org/uniprot/P26636 P26636]
+
−
** [http://www.uniprot.org/uniprot/P39919 P39919]
+
−
** [http://www.uniprot.org/uniprot/P37464 P37464]
+
−
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
+
−
** [http://www.uniprot.org/uniprot/P75107 P75107]
+
−
** [http://www.uniprot.org/uniprot/P73201 P73201]
+
−
** [http://www.uniprot.org/uniprot/O82108 O82108]
+
−
** [http://www.uniprot.org/uniprot/O82110 O82110]
+
−
** [http://www.uniprot.org/uniprot/O81983 O81983]
+
−
** [http://www.uniprot.org/uniprot/O45887 O45887]
+
−
** [http://www.uniprot.org/uniprot/O14018 O14018]
+
−
** [http://www.uniprot.org/uniprot/P54221 P54221]
+
−
** [http://www.uniprot.org/uniprot/P07284 P07284]
+
−
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
+
−
{{#set: ec number=EC-6.1.1.11}}
+
−
{{#set: gene associated=Tiso_gene_587|Tiso_gene_1682|Tiso_gene_1684|Tiso_gene_10015}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:12, 21 March 2018

Reaction URPHOS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • uridine_phosphorylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 phosphate[c] + 1 uridine[c] <=> 1 uracil[c] + 1 α-D-ribose-1-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5532, nucleoside and nucleotide degradation (archaea): PWY-5532
    • 3 reactions found over 10 reactions in the full pathway
  • PWY0-1295, pyrimidine ribonucleosides degradation: PWY0-1295
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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