Difference between revisions of "SERINE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-108 CPD-108] == * smiles: ** CC1(C=CC(=CC=1)O) * inchi key: ** InChIKey=IWDCLRJOBJJRNH-UHFF...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-108 CPD-108] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE--TRNA-LIGASE-RXN SERINE--TRNA-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** CC1(C=CC(=CC=1)O)
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=IWDCLRJOBJJRNH-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** 4-methylphenol
+
** ORF
−
* molecular weight:
+
** structural_maintenance_of_chromosomes_protein_6
−
** 108.14   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
−
** 4-hydroxytoluene
 
−
** p-hydroxytoluene
 
−
** 4-cresol
 
−
** p-cresol
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
== Reaction(s) of unknown directionality ==
+
** 1 [[ATP]][c] '''+''' 1 [[SER-tRNAs]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
−
* [[RXN-15588]]
+
* With common name(s):
 +
** 1 ATP[c] '''+''' 1 a tRNAser[c] '''+''' 1 L-serine[c] '''=>''' 1 an L-seryl-[tRNAser][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_1682]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10015]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_587]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1684]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 106-44-5
+
* RHEA:
−
* DRUGBANK : DB01688
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12292 12292]
−
* PUBCHEM:
+
* LIGAND-RXN:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=2879 2879]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
−
* HMDB : HMDB01858
+
* UNIPROT:
−
* LIGAND-CPD:
+
** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
−
** [http://www.genome.jp/dbget-bin/www_bget?C01468 C01468]
+
** [http://www.uniprot.org/uniprot/O51244 O51244]
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/O66647 O66647]
−
** [http://www.chemspider.com/Chemical-Structure.13285340.html 13285340]
+
** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17847 17847]
+
** [http://www.uniprot.org/uniprot/O27194 O27194]
−
* METABOLIGHTS : MTBLC17847
+
** [http://www.uniprot.org/uniprot/O84734 O84734]
−
{{#set: smiles=CC1(C=CC(=CC=1)O)}}
+
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
−
{{#set: inchi key=InChIKey=IWDCLRJOBJJRNH-UHFFFAOYSA-N}}
+
** [http://www.uniprot.org/uniprot/P47251 P47251]
−
{{#set: common name=4-methylphenol}}
+
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
−
{{#set: molecular weight=108.14    }}
+
** [http://www.uniprot.org/uniprot/O83653 O83653]
−
{{#set: common name=4-hydroxytoluene|p-hydroxytoluene|4-cresol|p-cresol}}
+
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
−
{{#set: consumed or produced by=RXN-15588}}
+
** [http://www.uniprot.org/uniprot/P49591 P49591]
 +
** [http://www.uniprot.org/uniprot/P56458 P56458]
 +
** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
 +
** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
 +
** [http://www.uniprot.org/uniprot/P43833 P43833]
 +
** [http://www.uniprot.org/uniprot/P26636 P26636]
 +
** [http://www.uniprot.org/uniprot/P39919 P39919]
 +
** [http://www.uniprot.org/uniprot/P37464 P37464]
 +
** [http://www.uniprot.org/uniprot/Q39230 Q39230]
 +
** [http://www.uniprot.org/uniprot/P75107 P75107]
 +
** [http://www.uniprot.org/uniprot/P73201 P73201]
 +
** [http://www.uniprot.org/uniprot/O82108 O82108]
 +
** [http://www.uniprot.org/uniprot/O82110 O82110]
 +
** [http://www.uniprot.org/uniprot/O81983 O81983]
 +
** [http://www.uniprot.org/uniprot/O45887 O45887]
 +
** [http://www.uniprot.org/uniprot/O14018 O14018]
 +
** [http://www.uniprot.org/uniprot/P54221 P54221]
 +
** [http://www.uniprot.org/uniprot/P07284 P07284]
 +
** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=structural_maintenance_of_chromosomes_protein_6}}
 +
{{#set: ec number=EC-6.1.1.11}}
 +
{{#set: gene associated=Tiso_gene_1682|Tiso_gene_10015|Tiso_gene_587|Tiso_gene_1684}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:12, 21 March 2018

Reaction SERINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • structural_maintenance_of_chromosomes_protein_6
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNAser[c] + 1 L-serine[c] => 1 an L-seryl-[tRNAser][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SERINE--TRNA-LIGASE-RXN&oldid=46749"