Difference between revisions of "HYDROG-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.176-RXN 2.3.1.176-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROG-RXN HYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** cytosolic_fe-s_cluster_assem...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.3.1.176-RXN 2.3.1.176-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROG-RXN HYDROG-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** cytosolic_fe-s_cluster_assembly_factor_narfl
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.176 EC-2.3.1.176]
+
** [http://enzyme.expasy.org/EC/1.12.7.2 EC-1.12.7.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-7257]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-202]][c] '''+''' 1 [[PROPIONYL-COA]][c]
+
** 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[HYDROGEN-MOLECULE]][c] '''<=>''' 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3&alpha;,7&alpha;,12&alpha;-trihydroxy-24-oxo-5-&beta;-cholestanoyl CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 choloyl-CoA[c] '''+''' 1 propanoyl-CoA[c]
+
** 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 H2[c] '''<=>''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16181]]
+
* Gene: [[Tiso_gene_4288]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6061]], bile acid biosynthesis, neutral pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6061 PWY-6061]
+
* [[PWY-6780]], hydrogen production VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6780 PWY-6780]
−
** '''3''' reactions found over '''29''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
 +
** '''5''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-6785]], hydrogen production VIII: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6785 PWY-6785]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6759]], hydrogen production III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6759 PWY-6759]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUDEG-II-PWY]], L-glutamate degradation VII (to butanoate): [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-II-PWY GLUDEG-II-PWY]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16865 16865]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03719 R03719]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00019 R00019]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: ec number=EC-2.3.1.176}}
+
** [http://www.uniprot.org/uniprot/P27648 P27648]
−
{{#set: gene associated=Tiso_gene_16181}}
+
** [http://www.uniprot.org/uniprot/P31892 P31892]
−
{{#set: in pathway=PWY-6061}}
+
** [http://www.uniprot.org/uniprot/O25350 O25350]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/O67092 O67092]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P31891 P31891]
−
{{#set: reconstruction source=esiliculosus|athaliana}}
+
** [http://www.uniprot.org/uniprot/P0AAJ8 P0AAJ8]
 +
** [http://www.uniprot.org/uniprot/O66894 O66894]
 +
** [http://www.uniprot.org/uniprot/P0AAM1 P0AAM1]
 +
** [http://www.uniprot.org/uniprot/P31898 P31898]
 +
** [http://www.uniprot.org/uniprot/P0ACE0 P0ACE0]
 +
** [http://www.uniprot.org/uniprot/O28891 O28891]
 +
** [http://www.uniprot.org/uniprot/O66895 O66895]
 +
** [http://www.uniprot.org/uniprot/Q9ZLK4 Q9ZLK4]
 +
** [http://www.uniprot.org/uniprot/Q9WY44 Q9WY44]
 +
** [http://www.uniprot.org/uniprot/Q46508 Q46508]
 +
** [http://www.uniprot.org/uniprot/O66896 O66896]
 +
** [http://www.uniprot.org/uniprot/O67095 O67095]
 +
** [http://www.uniprot.org/uniprot/Q9PN32 Q9PN32]
 +
** [http://www.uniprot.org/uniprot/P13061 P13061]
 +
** [http://www.uniprot.org/uniprot/Q9UYN3 Q9UYN3]
 +
** [http://www.uniprot.org/uniprot/P16429 P16429]
 +
** [http://www.uniprot.org/uniprot/O52683 O52683]
 +
** [http://www.uniprot.org/uniprot/P13066 P13066]
 +
** [http://www.uniprot.org/uniprot/O25349 O25349]
 +
** [http://www.uniprot.org/uniprot/P0AAK1 P0AAK1]
 +
** [http://www.uniprot.org/uniprot/P29166 P29166]
 +
** [http://www.uniprot.org/uniprot/P07603 P07603]
 +
** [http://www.uniprot.org/uniprot/P13628 P13628]
 +
** [http://www.uniprot.org/uniprot/P0ACD8 P0ACD8]
 +
** [http://www.uniprot.org/uniprot/P69739 P69739]
 +
** [http://www.uniprot.org/uniprot/P12636 P12636]
 +
** [http://www.uniprot.org/uniprot/P12635 P12635]
 +
** [http://www.uniprot.org/uniprot/Q59262 Q59262]
 +
** [http://www.uniprot.org/uniprot/P33375 P33375]
 +
** [http://www.uniprot.org/uniprot/P33374 P33374]
 +
** [http://www.uniprot.org/uniprot/P21950 P21950]
 +
** [http://www.uniprot.org/uniprot/P21949 P21949]
 +
** [http://www.uniprot.org/uniprot/P23000 P23000]
 +
** [http://www.uniprot.org/uniprot/Q7M121 Q7M121]
 +
** [http://www.uniprot.org/uniprot/P15283 P15283]
 +
** [http://www.uniprot.org/uniprot/P15284 P15284]
 +
** [http://www.uniprot.org/uniprot/P16430 P16430]
 +
** [http://www.uniprot.org/uniprot/P16431 P16431]
 +
** [http://www.uniprot.org/uniprot/P16432 P16432]
 +
** [http://www.uniprot.org/uniprot/P16433 P16433]
 +
** [http://www.uniprot.org/uniprot/P17633 P17633]
 +
** [http://www.uniprot.org/uniprot/P17632 P17632]
 +
** [http://www.uniprot.org/uniprot/P18191 P18191]
 +
** [http://www.uniprot.org/uniprot/P18637 P18637]
 +
** [http://www.uniprot.org/uniprot/P18636 P18636]
 +
** [http://www.uniprot.org/uniprot/Q46606 Q46606]
 +
** [http://www.uniprot.org/uniprot/P31875 P31875]
 +
** [http://www.uniprot.org/uniprot/Q7M0Y1 Q7M0Y1]
 +
** [http://www.uniprot.org/uniprot/Q7M0Y0 Q7M0Y0]
 +
** [http://www.uniprot.org/uniprot/Q9S8S0 Q9S8S0]
 +
** [http://www.uniprot.org/uniprot/P31883 P31883]
 +
** [http://www.uniprot.org/uniprot/P21960 P21960]
 +
** [http://www.uniprot.org/uniprot/Q43953 Q43953]
 +
** [http://www.uniprot.org/uniprot/O96948 O96948]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=cytosolic_fe-s_cluster_assembly_factor_narfl}}
 +
{{#set: ec number=EC-1.12.7.2}}
 +
{{#set: gene associated=Tiso_gene_4288}}
 +
{{#set: in pathway=PWY-6780|PWY4LZ-257|PWY-6785|PWY-6759|GLUDEG-II-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:12, 21 March 2018

Reaction HYDROG-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • cytosolic_fe-s_cluster_assembly_factor_narfl
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6780, hydrogen production VI: PWY-6780
    • 1 reactions found over 2 reactions in the full pathway
  • PWY4LZ-257, superpathway of fermentation (Chlamydomonas reinhardtii): PWY4LZ-257
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-6785, hydrogen production VIII: PWY-6785
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6759, hydrogen production III: PWY-6759
    • 1 reactions found over 1 reactions in the full pathway
  • GLUDEG-II-PWY, L-glutamate degradation VII (to butanoate): GLUDEG-II-PWY
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=HYDROG-RXN&oldid=46842"