Difference between revisions of "PRIBFAICARPISOM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8032 RXN-8032] == * direction: ** REVERSIBLE * common name: ** 3-ketopimelyl-CoA thiolase * ec...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRIBFAICARPISOM-RXN PRIBFAICARPISOM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phospho...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8032 RXN-8032] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRIBFAICARPISOM-RXN PRIBFAICARPISOM-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-ketopimelyl-CoA thiolase
+
** phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
+
** [http://enzyme.expasy.org/EC/5.3.1.16 EC-5.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[3-OXOPIMELOYL-COA]][c] '''+''' 1 [[CO-A]][c] '''<=>''' 1 [[GLUTARYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c]
+
** 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-oxopimeloyl-CoA[c] '''+''' 1 coenzyme A[c] '''<=>''' 1 glutaryl-CoA[c] '''+''' 1 acetyl-CoA[c]
+
** 1 1-(5-phospho-&beta;-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide[c] '''=>''' 1 phosphoribulosylformimino-AICAR-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7195]]
+
* Gene: [[Tiso_gene_1565]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_11199]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[CENTBENZCOA-PWY]], benzoyl-CoA degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=CENTBENZCOA-PWY CENTBENZCOA-PWY]
+
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
+
−
** '''5''' reactions found over '''17''' reactions in the full pathway
+
−
* [[P321-PWY]], benzoyl-CoA degradation III (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P321-PWY P321-PWY]
+
−
** '''1''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15469 15469]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05586 R05586]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04640 R04640]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: common name=3-ketopimelyl-CoA thiolase}}
+
** [http://www.uniprot.org/uniprot/Q02131 Q02131]
−
{{#set: ec number=EC-2.3.1}}
+
** [http://www.uniprot.org/uniprot/Q9JVH4 Q9JVH4]
−
{{#set: gene associated=Tiso_gene_7195}}
+
** [http://www.uniprot.org/uniprot/Q9PM74 Q9PM74]
−
{{#set: in pathway=CENTBENZCOA-PWY|PWY-7401|P321-PWY}}
+
** [http://www.uniprot.org/uniprot/P44435 P44435]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P10372 P10372]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P10371 P10371]
−
{{#set: reconstruction source=esiliculosus|athaliana}}
+
** [http://www.uniprot.org/uniprot/P16250 P16250]
 +
** [http://www.uniprot.org/uniprot/P05324 P05324]
 +
** [http://www.uniprot.org/uniprot/P26720 P26720]
 +
** [http://www.uniprot.org/uniprot/P50936 P50936]
 +
** [http://www.uniprot.org/uniprot/P74561 P74561]
 +
** [http://www.uniprot.org/uniprot/O82782 O82782]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase}}
 +
{{#set: ec number=EC-5.3.1.16}}
 +
{{#set: gene associated=Tiso_gene_1565|Tiso_gene_11199}}
 +
{{#set: in pathway=HISTSYN-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:12, 21 March 2018

Reaction PRIBFAICARPISOM-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylformimino-5-aminoimidazole_carboxamide_ribonucleotide_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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