Difference between revisions of "DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-AMINOADIPATE-AMINOTRANSFERASE-RXN 2-AMINOADIPATE-AMINOTRANSFERASE-RXN] == * direction: ** REVERSI...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN] == * direction: ** LEFT-...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-AMINOADIPATE-AMINOTRANSFERASE-RXN 2-AMINOADIPATE-AMINOTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** diphosphomevalonate_decarboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.39 EC-2.6.1.39]
+
** [http://enzyme.expasy.org/EC/4.1.1.33 EC-4.1.1.33]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-468]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[2K-ADIPATE]][c] '''+''' 1 [[GLT]][c]
+
** 1 [[CPD-641]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-2-aminoadipate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 2-oxoadipate[c] '''+''' 1 L-glutamate[c]
+
** 1 (R)-mevalonate diphosphate[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 isopentenyl diphosphate[c] '''+''' 1 CO2[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_4171]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-3081]], L-lysine biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3081 PWY-3081]
+
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5283]], L-lysine degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5283 PWY-5283]
+
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''8''' reactions in the full pathway
−
* [[LYSINE-AMINOAD-PWY]], L-lysine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-AMINOAD-PWY LYSINE-AMINOAD-PWY]
+
−
** '''3''' reactions found over '''9''' reactions in the full pathway
+
−
* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425]
+
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12601 12601]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23732 23732]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01939 R01939]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01121 R01121]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: ec number=EC-2.6.1.39}}
+
** [http://www.uniprot.org/uniprot/P32377 P32377]
−
{{#set: in pathway=PWY-3081|PWY-5283|LYSINE-AMINOAD-PWY|LYSINE-DEG1-PWY|PWY66-425}}
+
** [http://www.uniprot.org/uniprot/Q9U2A1 Q9U2A1]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q9U294 Q9U294]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/O13963 O13963]
−
{{#set: reconstruction source=in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/Q9M381 Q9M381]
 +
** [http://www.uniprot.org/uniprot/O23722 O23722]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=diphosphomevalonate_decarboxylase}}
 +
{{#set: ec number=EC-4.1.1.33}}
 +
{{#set: gene associated=Tiso_gene_4171}}
 +
{{#set: in pathway=PWY-922|PWY-7391}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:13, 21 March 2018

Reaction DIPHOSPHOMEVALONTE-DECARBOXYLASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • diphosphomevalonate_decarboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (R)-mevalonate diphosphate[c] + 1 ATP[c] => 1 phosphate[c] + 1 isopentenyl diphosphate[c] + 1 CO2[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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