Difference between revisions of "RXN-12625"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPA GDPA] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-apyrase * Synonym(s): == Reactio...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12625 RXN-12625] == * direction: ** LEFT-TO-RIGHT * common name: ** N,N'-diacetylchitobiose &be...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPA GDPA] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12625 RXN-12625] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** GDP-apyrase
+
** N,N'-diacetylchitobiose β-N-acetylglucosaminidase
 +
** beta-hexosaminidase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.2.1.52 EC-3.2.1.52]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[GDP]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[Pi]][c] '''+''' 1.0 [[GMP]][c] '''+''' 1.0 [[PROTON]][c]
+
** 1 [[CHITOBIOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[N-acetyl-D-glucosamine]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 GDP[c] '''+''' 1.0 H2O[c] '''=>''' 1.0 phosphate[c] '''+''' 1.0 GMP[c] '''+''' 1.0 H+[c]
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** 1 N,N'-diacetylchitobiose[c] '''+''' 1 H2O[c] '''=>''' 2 N-acetyl-D-glucosamine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12899]]
+
* Gene: [[Tiso_gene_1129]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_14122]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7822]], chitin degradation III (Serratia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7822 PWY-7822]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6902]], chitin degradation II (Vibrio): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6902 PWY-6902]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30674 30674]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00022 R00022]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=GDP-apyrase}}
+
{{#set: common name=N,N'-diacetylchitobiose β-N-acetylglucosaminidase}}
−
{{#set: gene associated=Tiso_gene_12899}}
+
{{#set: common name=beta-hexosaminidase}}
−
{{#set: in pathway=}}
+
{{#set: ec number=EC-3.2.1.52}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_1129|Tiso_gene_14122}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-7822|PWY-6902}}
−
{{#set: reconstruction source=creinhardtii}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:15, 21 March 2018

Reaction RXN-12625

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • N,N'-diacetylchitobiose β-N-acetylglucosaminidase
    • beta-hexosaminidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7822, chitin degradation III (Serratia): PWY-7822
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6902, chitin degradation II (Vibrio): PWY-6902
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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