Difference between revisions of "Tiso gene 5173"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] == * direction: ** REVERSIBLE * common name: ** dimethylglycine_dehydrogenase **...")
 
(Created page with "Category:Gene == Gene Tiso_gene_5173 == * right end position: ** 11125 * transcription direction: ** POSITIVE * left end position: ** 9232 * centisome position: ** 66.8162...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] ==
+
== Gene Tiso_gene_5173 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 11125
−
* common name:
+
* transcription direction:
−
** dimethylglycine_dehydrogenase
+
** POSITIVE
−
** aminomethyltransferase
+
* left end position:
−
** glycine_cleavage_t-protein_c-terminal_barrel_domain
+
** 9232
−
** sarcosine_dehydrogenase
+
* centisome position:
−
* ec number:
+
** 66.81624   
−
** [http://enzyme.expasy.org/EC/2.1.2.10 EC-2.1.2.10]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[RXN-10642]]
−
** 1 [[THF-GLU-N]][c] '''+''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''<=>''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[AMMONIUM]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 a tetrahydrofolate[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''<=>''' 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine[c] '''+''' 1 ammonium[c]
+
** Source: [[annotation-experimental_annotation]]
−
 
+
*** Assignment: ec-number
−
== Genes associated with this reaction  ==
+
** Source: [[orthology-esiliculosus]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** Source: [[orthology-creinhardtii]]
−
* [[Tiso_gene_15700]]
+
* Reaction: [[UROGENDECARBOX-RXN]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_14788]]
+
*** Assignment: ec-number
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: ec-number
−
* [[Tiso_gene_17287]]
+
** Source: [[orthology-synechocystis]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
** Source: [[orthology-creinhardtii]]
−
** EXPERIMENTAL_ANNOTATION
+
== Pathways associated ==
−
***EC-NUMBER
+
* [[HEMESYN2-PWY]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[PWY0-1415]]
−
* [[Tiso_gene_6882]]
+
* [[PWY-7159]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[PWY-5531]]
−
* [[Tiso_gene_2717]]
+
* [[CHLOROPHYLL-SYN]]
−
** IN-SILICO_ANNOTATION
+
* [[PWY-7766]]
−
***EC-NUMBER
+
* [[HEME-BIOSYNTHESIS-II]]
−
* [[Tiso_gene_19389]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=11125}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=9232}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
+
{{#set: centisome position=66.81624    }}
−
* UNIPROT:
+
{{#set: reaction associated=RXN-10642|UROGENDECARBOX-RXN}}
−
** [http://www.uniprot.org/uniprot/P25285 P25285]
+
{{#set: pathway associated=HEMESYN2-PWY|PWY0-1415|PWY-7159|PWY-5531|CHLOROPHYLL-SYN|PWY-7766|HEME-BIOSYNTHESIS-II}}
−
** [http://www.uniprot.org/uniprot/P28337 P28337]
+
−
** [http://www.uniprot.org/uniprot/P27248 P27248]
+
−
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
+
−
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
+
−
** [http://www.uniprot.org/uniprot/P48728 P48728]
+
−
** [http://www.uniprot.org/uniprot/P49364 P49364]
+
−
** [http://www.uniprot.org/uniprot/P49095 P49095]
+
−
** [http://www.uniprot.org/uniprot/P49363 P49363]
+
−
** [http://www.uniprot.org/uniprot/P54260 P54260]
+
−
** [http://www.uniprot.org/uniprot/P49361 P49361]
+
−
** [http://www.uniprot.org/uniprot/P49362 P49362]
+
−
** [http://www.uniprot.org/uniprot/O49954 O49954]
+
−
** [http://www.uniprot.org/uniprot/P93256 P93256]
+
−
** [http://www.uniprot.org/uniprot/O32955 O32955]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=dimethylglycine_dehydrogenase}}
+
−
{{#set: common name=aminomethyltransferase}}
+
−
{{#set: common name=glycine_cleavage_t-protein_c-terminal_barrel_domain}}
+
−
{{#set: common name=sarcosine_dehydrogenase}}
+
−
{{#set: ec number=EC-2.1.2.10}}
+
−
{{#set: gene associated=Tiso_gene_15700|Tiso_gene_14788|Tiso_gene_17287|Tiso_gene_6882|Tiso_gene_2717|Tiso_gene_19389}}
+
−
{{#set: in pathway=GLYCLEAV-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:17, 21 March 2018

Gene Tiso_gene_5173

  • right end position:
    • 11125
  • transcription direction:
    • POSITIVE
  • left end position:
    • 9232
  • centisome position:
    • 66.81624
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5173&oldid=47435"