Difference between revisions of "PGLYCDEHYDROG-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETOACETATE-DECARBOXYLASE-RXN ACETOACETATE-DECARBOXYLASE-RXN] == * direction: ** LEFT-TO-RIGHT * e...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** d-3-phosphogly...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETOACETATE-DECARBOXYLASE-RXN ACETOACETATE-DECARBOXYLASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** d-3-phosphoglycerate_dehydrogenase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.4 EC-4.1.1.4]
+
** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[3-KETOBUTYRATE]][c] '''=>''' 1 [[ACETONE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 acetoacetate[c] '''=>''' 1 acetone[c] '''+''' 1 CO2[c]
+
** 1 3-phospho-D-glycerate[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 3-phospho-hydroxypyruvate[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_6223]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6224]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17123]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15687]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_15686]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18904]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
+
* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5451]], acetone degradation I (to methylglyoxal): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5451 PWY-5451]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-7466]], acetone degradation III (to propane-1,2-diol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7466 PWY-7466]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
+
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19729 19729]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01366 R01366]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P23670 P23670]
+
** [http://www.uniprot.org/uniprot/Q58424 Q58424]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P43885 P43885]
−
{{#set: ec number=EC-4.1.1.4}}
+
** [http://www.uniprot.org/uniprot/P35136 P35136]
−
{{#set: in pathway=PWY66-367|PWY-5451|PWY-6588|PWY-7466|PWY-6876}}
+
** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P40510 P40510]
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/P40054 P40054]
 +
** [http://www.uniprot.org/uniprot/O49485 O49485]
 +
** [http://www.uniprot.org/uniprot/P87228 P87228]
 +
** [http://www.uniprot.org/uniprot/O04130 O04130]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=d-3-phosphoglycerate_dehydrogenase}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-1.1.1.95}}
 +
{{#set: gene associated=Tiso_gene_6223|Tiso_gene_6224|Tiso_gene_17123|Tiso_gene_15687|Tiso_gene_15686|Tiso_gene_18904}}
 +
{{#set: in pathway=SERSYN-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:18, 21 March 2018

Reaction PGLYCDEHYDROG-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • d-3-phosphoglycerate_dehydrogenase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-phospho-D-glycerate[c] + 1 NAD+[c] <=> 1 H+[c] + 1 3-phospho-hydroxypyruvate[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SERSYN-PWY, L-serine biosynthesis: SERSYN-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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