Difference between revisions of "3.1.13.4-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** saccharopine_dehydrogen...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.13.4-RXN 3.1.13.4-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** nocturin * ec number:...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.13.4-RXN 3.1.13.4-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** saccharopine_dehydrogenase
+
** nocturin
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.5.1.9 EC-1.5.1.9]
+
** [http://enzyme.expasy.org/EC/3.1.13.4 EC-3.1.13.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[SACCHAROPINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[ALLYSINE]][c]
+
** 1 [[mRNAs-With-PolyA-Tails]][c] '''+''' n [[WATER]][c] '''=>''' n [[AMP]][c] '''+''' 1 [[mRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 L-saccharopine[c] '''=>''' 1 H+[c] '''+''' 1 L-glutamate[c] '''+''' 1 NADH[c] '''+''' 1 (S)-2-amino-6-oxohexanoate[c]
+
** 1 a mRNA with poly(A) tail[c] '''+''' n H2O[c] '''=>''' n AMP[c] '''+''' 1 an mRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_9366]]
+
* Gene: [[Tiso_gene_17497]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_7038]]
+
* Gene: [[Tiso_gene_17498]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_7039]]
+
* Gene: [[Tiso_gene_17499]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_4160]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10095]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_1156]]
+
−
** [[pantograph]]-[[athaliana]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
*** [[athaliana]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24520 24520]
+
** [http://www.uniprot.org/uniprot/P32521 P32521]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/Q09798 Q09798]
−
** [http://www.genome.jp/dbget-bin/www_bget?R02313 R02313]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=saccharopine_dehydrogenase}}
+
{{#set: common name=nocturin}}
−
{{#set: ec number=EC-1.5.1.9}}
+
{{#set: ec number=EC-3.1.13.4}}
−
{{#set: gene associated=Tiso_gene_9366|Tiso_gene_7038|Tiso_gene_7039|Tiso_gene_4160|Tiso_gene_10095|Tiso_gene_1156}}
+
{{#set: gene associated=Tiso_gene_17497|Tiso_gene_17498|Tiso_gene_17499}}
−
{{#set: in pathway=LYSINE-DEG1-PWY}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus|athaliana}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Latest revision as of 20:18, 21 March 2018

Reaction 3.1.13.4-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nocturin
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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